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<script src="https://code.jquery.com/jquery.js"></script>
<script src="https://netdna.bootstrapcdn.com/bootstrap/3.3.5/js/bootstrap.min.js"></script>
<script src="https://d3js.org/d3.v3.min.js"></script>
<script src="/Users/sfsdfd62/Desktop/web/scripts/node_modules/phylotree/dist/phylotree.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/underscore.js/1.8.3/underscore-min.js" charset="utf-8"></script>
<script>
var example_tree = "(((EELA:0.150276,CONGERA:0.213019):0.230956,(EELB:0.263487,CONGERB:0.202633):0.246917):0.094785,((CAVEFISH:0.451027,(GOLDFISH:0.340495,ZEBRAFISH:0.390163):0.220565):0.067778,((((((NSAM:0.008113,NARG:0.014065):0.052991,SPUN:0.061003,(SMIC:0.027806,SDIA:0.015298,SXAN:0.046873):0.046977):0.009822,(NAUR:0.081298,(SSPI:0.023876,STIE:0.013652):0.058179):0.091775):0.073346,(MVIO:0.012271,MBER:0.039798):0.178835):0.147992,((BFNKILLIFISH:0.317455,(ONIL:0.029217,XCAU:0.084388):0.201166):0.055908,THORNYHEAD:0.252481):0.061905):0.157214,LAMPFISH:0.717196,((SCABBARDA:0.189684,SCABBARDB:0.362015):0.282263,((VIPERFISH:0.318217,BLACKDRAGON:0.109912):0.123642,LOOSEJAW:0.397100):0.287152):0.140663):0.206729):0.222485,(COELACANTH:0.558103,((CLAWEDFROG:0.441842,SALAMANDER:0.299607):0.135307,((CHAMELEON:0.771665,((PIGEON:0.150909,CHICKEN:0.172733):0.082163,ZEBRAFINCH:0.099172):0.272338):0.014055,((BOVINE:0.167569,DOLPHIN:0.157450):0.104783,ELEPHANT:0.166557):0.367205):0.050892):0.114731):0.295021)"
// tree from Yokoyama et al http://www.ncbi.nlm.nih.gov/pubmed/18768804
var tree = d3.layout.phylotree()
// create a tree layout object
.svg(d3.select("#tree_display"));
// render to this SVG element
tree(d3.layout.newick_parser(example_tree))
// parse the Newick into a d3 hierarchy object with additional fields
.layout();
// layout and render the tree
</script>
The text was updated successfully, but these errors were encountered:
encounter this when running the following code
<script src="https://code.jquery.com/jquery.js"></script> <script src="https://netdna.bootstrapcdn.com/bootstrap/3.3.5/js/bootstrap.min.js"></script> <script src="https://d3js.org/d3.v3.min.js"></script> <script src="/Users/sfsdfd62/Desktop/web/scripts/node_modules/phylotree/dist/phylotree.js"></script> <script src="https://cdnjs.cloudflare.com/ajax/libs/underscore.js/1.8.3/underscore-min.js" charset="utf-8"></script> <script> var example_tree = "(((EELA:0.150276,CONGERA:0.213019):0.230956,(EELB:0.263487,CONGERB:0.202633):0.246917):0.094785,((CAVEFISH:0.451027,(GOLDFISH:0.340495,ZEBRAFISH:0.390163):0.220565):0.067778,((((((NSAM:0.008113,NARG:0.014065):0.052991,SPUN:0.061003,(SMIC:0.027806,SDIA:0.015298,SXAN:0.046873):0.046977):0.009822,(NAUR:0.081298,(SSPI:0.023876,STIE:0.013652):0.058179):0.091775):0.073346,(MVIO:0.012271,MBER:0.039798):0.178835):0.147992,((BFNKILLIFISH:0.317455,(ONIL:0.029217,XCAU:0.084388):0.201166):0.055908,THORNYHEAD:0.252481):0.061905):0.157214,LAMPFISH:0.717196,((SCABBARDA:0.189684,SCABBARDB:0.362015):0.282263,((VIPERFISH:0.318217,BLACKDRAGON:0.109912):0.123642,LOOSEJAW:0.397100):0.287152):0.140663):0.206729):0.222485,(COELACANTH:0.558103,((CLAWEDFROG:0.441842,SALAMANDER:0.299607):0.135307,((CHAMELEON:0.771665,((PIGEON:0.150909,CHICKEN:0.172733):0.082163,ZEBRAFINCH:0.099172):0.272338):0.014055,((BOVINE:0.167569,DOLPHIN:0.157450):0.104783,ELEPHANT:0.166557):0.367205):0.050892):0.114731):0.295021)" // tree from Yokoyama et al http://www.ncbi.nlm.nih.gov/pubmed/18768804 var tree = d3.layout.phylotree() // create a tree layout object .svg(d3.select("#tree_display")); // render to this SVG element tree(d3.layout.newick_parser(example_tree)) // parse the Newick into a d3 hierarchy object with additional fields .layout(); // layout and render the tree </script>The text was updated successfully, but these errors were encountered: