Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: adding seqvars module (#1737) #1761

Merged
merged 45 commits into from
Jul 1, 2024
Merged

Conversation

holtgrewe
Copy link
Collaborator

No description provided.

@holtgrewe holtgrewe linked an issue Jul 1, 2024 that may be closed by this pull request
2 tasks
Copy link

github-actions bot commented Jul 1, 2024

deps-report 🔍

Commit scanned: a65d25c
ℹ️ Python version 3.10 is used by your project but the latest version is 3.12.

Vulnerable dependencies

4 dependencies have vulnerabilities 😱
Dependency Advisory Versions impacted
djangorestframework (transitive) Affected versions of the package djangorestframework are vulnerable to Cross-site Scripting (XSS) via the break_long_headers template filter due to improper input sanitization before splitting and joining with <3.15.2
jinja2 (transitive) In Jinja2, the from_string function is prone to Server Side Template Injection (SSTI) where it takes the "source" parameter as a template object, renders it, and then returns it. The attacker can exploit it with {{INJECTION COMMANDS}} in a URI. NOTE: The maintainer and multiple third parties believe that this vulnerability isn't valid because users shouldn't use untrusted templates without sandboxing. >=0
pyopenssl (transitive) CVE-2023-6129 affects PyOpenSSL versions starting from 22.0.0 due to a vulnerability in the POLY1305 MAC algorithm on PowerPC CPUs. This issue could lead to state corruption in applications, causing inaccurate outcomes or service disruptions. Attackers need specific conditions to exploit this flaw, including the ability to manipulate the algorithm's use and reliance on certain system registers by the application. >=22.0.0
sqlalchemy Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563 <2.0.0b1

Outdated dependencies

33 outdated dependencies found (including 13 outdated major versions)😢
Dependency Installed version Latest version
argon2-cffi (transitive) 21.3.0 23.1.0
billiard (transitive) 3.6.4.0 4.2.0
crispy-bootstrap4 (transitive) 2022.1 2024.1
django 3.2.25 5.0.6
mistune (transitive) 2.0.5 3.0.2
packaging (transitive) 23.2 24.1
protobuf 3.20.3 5.27.2
setuptools (transitive) 67.6.1 70.1.1
sphinx (transitive) 6.2.1 7.3.7
sphinx-rtd-theme (transitive) 1.2.2 2.0.0
sqlalchemy 1.4.52 2.0.31
unidecode (transitive) 0.4.21 1.3.8
xmlschema (transitive) 2.5.1 3.3.1
Dependency Installed version Latest version
botocore (transitive) 1.34.131 1.34.136
celery (transitive) 5.2.7 5.4.0
django-autocomplete-light (transitive) 3.9.4 3.11.0
django-crispy-forms (transitive) 2.0 2.2
django-db-file-storage (transitive) 0.5.5 0.5.6.1
django-debug-toolbar 4.3.0 4.4.2
django-environ (transitive) 0.10.0 0.11.2
django-iconify (transitive) 0.1.1 0.4
django-model-utils (transitive) 4.3.1 4.5.1
django-plugins-bihealth 0.4.0 0.5.2
django-postgres-copy 2.3.7 2.7.4
djangorestframework (transitive) 3.14.0 3.15.2
docutils (transitive) 0.18.1 0.21.2
drf-keyed-list-bihealth 0.1.1 0.2.1
markdown (transitive) 3.4.1 3.6
pydantic-core (transitive) 2.18.4 2.20.0
requests-http-signature 0.2.0 0.7.1
rules (transitive) 3.3 3.4
versioneer (transitive) 0.28 0.29
wheel (transitive) 0.40.0 0.43.0

Logs

Copy link

codecov bot commented Jul 1, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 20%. Comparing base (22ed8bd) to head (a65d25c).
Report is 10 commits behind head on main.

❗ There is a different number of reports uploaded between BASE (22ed8bd) and HEAD (a65d25c). Click for more details.

HEAD has 1 upload less than BASE
Flag BASE (22ed8bd) HEAD (a65d25c)
python 1 0
Additional details and impacted files
@@           Coverage Diff            @@
##            main   #1761      +/-   ##
========================================
- Coverage     75%     20%     -56%     
========================================
  Files        850     207     -643     
  Lines      43971    9637   -34334     
  Branches    2209    2209              
========================================
- Hits       33267    1968   -31299     
+ Misses     10704    7669    -3035     

see 643 files with indirect coverage changes

@holtgrewe holtgrewe merged commit 4bab348 into main Jul 1, 2024
15 of 16 checks passed
@holtgrewe holtgrewe deleted the 1737-add-cases_seqvars-module branch July 1, 2024 14:36
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Add "seqvars" module
1 participant