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fix: igv linkout does not work for mitochondrial positions (#1283) #1559

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stolpeo
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@stolpeo stolpeo commented Apr 19, 2024

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@stolpeo stolpeo linked an issue Apr 19, 2024 that may be closed by this pull request
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deps-report 🔍

Commit scanned: c087d0b
ℹ️ Python version 3.10 is used by your project but the latest version is 3.12.

Vulnerable dependencies

2 dependencies have vulnerabilities 😱
Dependency Advisory Versions impacted
pyopenssl (transitive) CVE-2023-6129 affects PyOpenSSL versions starting from 22.0.0 due to a vulnerability in the POLY1305 MAC algorithm on PowerPC CPUs. This issue could lead to state corruption in applications, causing inaccurate outcomes or service disruptions. Attackers need specific conditions to exploit this flaw, including the ability to manipulate the algorithm's use and reliance on certain system registers by the application. >=22.0.0
sqlalchemy Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563 <2.0.0b1

Outdated dependencies

51 outdated dependencies found (including 17 outdated major versions)😢
Dependency Installed version Latest version
argon2-cffi (transitive) 21.3.0 23.1.0
billiard (transitive) 3.6.4.0 4.2.0
coverage (dev,transitive) 6.5.0 7.4.4
crispy-bootstrap4 (transitive) 2022.1 2024.1
django 3.2.25 5.0.4
flake8 (dev) 6.1.0 7.0.0
lxml 4.9.4 5.2.1
mistune (transitive) 2.0.5 3.0.2
packaging (transitive) 23.2 24.0
protobuf 3.20.3 5.26.1
regex (transitive) 2023.12.25 2024.4.16
setuptools (transitive) 67.6.1 69.5.1
sphinx (transitive) 6.2.1 7.3.7
sphinx-rtd-theme (transitive) 1.2.2 2.0.0
sqlalchemy 1.4.52 2.0.29
unidecode (transitive) 0.4.21 1.3.8
xmlschema (transitive) 2.5.1 3.3.0
Dependency Installed version Latest version
aiobotocore (transitive) 2.12.2 2.12.3
aiohttp (transitive) 3.9.3 3.9.5
black 24.3.0 24.4.0
botocore (transitive) 1.34.51 1.34.87
celery (transitive) 5.2.7 5.4.0
django-autocomplete-light (transitive) 3.9.4 3.11.0
django-crispy-forms (transitive) 2.0 2.1
django-db-file-storage (transitive) 0.5.5 0.5.6.1
django-environ (transitive) 0.10.0 0.11.2
django-iconify (transitive) 0.1.1 0.4
django-model-utils (transitive) 4.3.1 4.5.0
django-plugins-bihealth 0.4.0 0.5.2
django-postgres-copy 2.3.7 2.7.4
djangorestframework (transitive) 3.14.0 3.15.1
docutils (transitive) 0.18.1 0.21.1
drf-keyed-list-bihealth 0.1.1 0.2.1
exceptiongroup (transitive) 1.2.0 1.2.1
faker (dev,transitive) 24.4.0 24.11.0
idna (transitive) 3.6 3.7
kombu (transitive) 5.3.6 5.3.7
markdown (transitive) 3.4.1 3.6
matplotlib-inline (dev,transitive) 0.1.6 0.1.7
pandas 2.2.1 2.2.2
parso (dev,transitive) 0.8.3 0.8.4
pydantic 2.6.4 2.7.0
pydantic-core (transitive) 2.16.3 2.18.1
pyflakes (dev,transitive) 3.1.0 3.2.0
requests-http-signature 0.2.0 0.7.1
sentry-sdk 1.44.1 1.45.0
traitlets (dev,transitive) 5.14.2 5.14.3
typing-extensions (transitive) 4.10.0 4.11.0
urllib3 (transitive) 2.0.7 2.2.1
versioneer (transitive) 0.28 0.29
wheel (transitive) 0.40.0 0.43.0

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codecov bot commented Apr 19, 2024

Codecov Report

Attention: Patch coverage is 0% with 7 lines in your changes are missing coverage. Please review.

Project coverage is 37%. Comparing base (6b1d6c9) to head (c087d0b).

Additional details and impacted files
@@           Coverage Diff            @@
##            main   #1559      +/-   ##
========================================
- Coverage     69%     37%     -32%     
========================================
  Files        381     137     -244     
  Lines      25074    7686   -17388     
  Branches    1686    1684       -2     
========================================
- Hits       17492    2906   -14586     
+ Misses      7582    4780    -2802     
Files Coverage Δ
...iants/vueapp/src/components/FilterResultsTable.vue 2% <0%> (ø)
svs/vueapp/src/components/SvFilterResultsTable.vue 11% <0%> (ø)

... and 244 files with indirect coverage changes

@stolpeo stolpeo enabled auto-merge (squash) April 19, 2024 12:12
@stolpeo stolpeo merged commit 1806783 into main Apr 19, 2024
15 of 16 checks passed
@stolpeo stolpeo deleted the 1283-igv-linkout-does-not-work-for-mitochondrial-positions branch April 19, 2024 12:15
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IGV linkout does not work for mitochondrial positions
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