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fix: limit seqvar details to gene from result row (#1380) #1404

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merged 2 commits into from
Mar 1, 2024

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@holtgrewe holtgrewe enabled auto-merge (squash) March 1, 2024 07:16
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github-actions bot commented Mar 1, 2024

deps-report 🔍

Commit scanned: bab14a4
ℹ️ Python version 3.10 is used by your project but the latest version is 3.12.

Vulnerable dependencies

2 dependencies have vulnerabilities 😱
Dependency Advisory Versions impacted
pyopenssl (transitive) CVE-2023-6129 affects PyOpenSSL versions starting from 22.0.0 due to a vulnerability in the POLY1305 MAC algorithm on PowerPC CPUs. This issue could lead to state corruption in applications, causing inaccurate outcomes or service disruptions. Attackers need specific conditions to exploit this flaw, including the ability to manipulate the algorithm's use and reliance on certain system registers by the application. >=22.0.0
sqlalchemy Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563 <2.0.0b1

Outdated dependencies

35 outdated dependencies found (including 16 outdated major versions)😢
Dependency Installed version Latest version
argon2-cffi (transitive) 21.3.0 23.1.0
billiard (transitive) 3.6.4.0 4.2.0
coverage (dev,transitive) 6.5.0 7.4.3
crispy-bootstrap4 (transitive) 2022.1 2024.1
django 3.2.24 5.0.2
flake8 (dev) 6.1.0 7.0.0
lxml 4.9.4 5.1.0
mistune (transitive) 2.0.5 3.0.2
protobuf 3.20.3 4.25.3
pydantic 1.10.14 2.6.3
setuptools (transitive) 67.6.1 69.1.1
sphinx (transitive) 6.2.1 7.2.6
sphinx-rtd-theme (transitive) 1.2.2 2.0.0
sqlalchemy 1.4.51 2.0.27
unidecode (transitive) 0.4.21 1.3.8
xmlschema (transitive) 2.5.1 3.0.2
Dependency Installed version Latest version
botocore (transitive) 1.34.51 1.34.53
celery (transitive) 5.2.7 5.3.6
django-autocomplete-light (transitive) 3.9.4 3.11.0
django-crispy-forms (transitive) 2.0 2.1
django-db-file-storage (transitive) 0.5.5 0.5.6.1
django-environ (transitive) 0.10.0 0.11.2
django-iconify (transitive) 0.1.1 0.4
django-model-utils (transitive) 4.3.1 4.4.0
django-plugins-bihealth 0.4.0 0.5.2
django-postgres-copy 2.3.7 2.7.4
docutils (transitive) 0.18.1 0.20.1
drf-keyed-list-bihealth 0.1.1 0.2.1
markdown (transitive) 3.4.1 3.5.2
pyflakes (dev,transitive) 3.1.0 3.2.0
python-dateutil 2.8.2 2.9.0
requests-http-signature 0.2.0 0.7.1
urllib3 (transitive) 2.0.7 2.2.1
versioneer (transitive) 0.28 0.29
wheel (transitive) 0.40.0 0.42.0

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codecov bot commented Mar 1, 2024

Codecov Report

Attention: Patch coverage is 0% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 38%. Comparing base (59ca963) to head (bab14a4).

Additional details and impacted files
@@           Coverage Diff            @@
##            main   #1404      +/-   ##
========================================
- Coverage     70%     38%     -32%     
========================================
  Files        381     135     -246     
  Lines      24691    7275   -17416     
  Branches    1597    1597              
========================================
- Hits       17362    2803   -14559     
+ Misses      7329    4472    -2857     
Files Coverage Δ
varfish/vueapp/src/varfish/api/mehari.ts 8% <0%> (ø)

... and 246 files with indirect coverage changes

@holtgrewe holtgrewe merged commit a194921 into main Mar 1, 2024
15 of 16 checks passed
@holtgrewe holtgrewe deleted the 1380-limit-gene-details-to-specific-gene branch March 1, 2024 07:36
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