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fix: exomiser parameters are wrong (#947) #1346

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merged 1 commit into from
Feb 8, 2024

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@stolpeo stolpeo commented Feb 8, 2024

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@stolpeo stolpeo linked an issue Feb 8, 2024 that may be closed by this pull request
@stolpeo stolpeo enabled auto-merge (squash) February 8, 2024 11:34
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codecov bot commented Feb 8, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (1041b48) 71.41% compared to head (9866f7f) 71.41%.
Report is 9 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1346   +/-   ##
=======================================
  Coverage   71.41%   71.41%           
=======================================
  Files         383      383           
  Lines       24536    24536           
  Branches     1582     1582           
=======================================
  Hits        17523    17523           
  Misses       7013     7013           
Files Coverage Δ
variants/models/scores.py 65.72% <ø> (ø)

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github-actions bot commented Feb 8, 2024

deps-report 🔍

Commit scanned: 9866f7f
ℹ️ Python version 3.10 is used by your project but the latest version is 3.12.

Vulnerable dependencies

2 dependencies have vulnerabilities 😱
Dependency Advisory Versions impacted
aiohttp (transitive) The vulnerability lies in the improper configuration of static resource resolution when aiohttp is used as a web server. It occurs when the follow_symlinks option is enabled without proper validation, leading to directory traversal vulnerabilities. Unauthorized access to arbitrary files on the system could potentially occur. The affected versions are >1.0.5, and the issue was patched in version 3.9.2. As a workaround, it is advised to disable the follow_symlinks option outside of a restricted local development environment, especially in a server accepting requests from remote users. Using a reverse proxy server to handle static resources is also recommended. aio-libs/aiohttp@1c33594 >1.0.5,<3.9.2
sqlalchemy Sqlalchemy 2.0.0b1 avoids leaking cleartext passwords to the open for careless uses of str(engine.URL()) in logs and prints. sqlalchemy/sqlalchemy#8563 <2.0.0b1

Outdated dependencies

51 outdated dependencies found (including 21 outdated major versions)😢
Dependency Installed version Latest version
argon2-cffi (transitive) 21.3.0 23.1.0
billiard (transitive) 3.6.4.0 4.2.0
black (dev) 23.11.0 24.1.1
certifi (transitive) 2023.11.17 2024.2.2
coverage (dev,transitive) 6.5.0 7.4.1
crispy-bootstrap4 (transitive) 2022.1 2023.1
django 3.2.23 5.0.2
faker (dev,transitive) 22.5.1 23.1.0
flake8 (dev) 6.1.0 7.0.0
fsspec (transitive) 2023.12.2 2024.2.0
lxml 4.9.4 5.1.0
mistune (transitive) 2.0.5 3.0.2
protobuf 3.20.3 4.25.2
pydantic 1.10.14 2.6.1
pytz (transitive) 2023.3.post1 2024.1
s3fs 2023.12.2 2024.2.0
setuptools (transitive) 67.6.1 69.0.3
sphinx (transitive) 6.2.1 7.2.6
sphinx-rtd-theme (transitive) 1.2.2 2.0.0
sqlalchemy 1.4.51 2.0.25
unidecode (transitive) 0.4.21 1.3.8
Dependency Installed version Latest version
aiobotocore (transitive) 2.11.0 2.11.2
aiohttp (transitive) 3.9.1 3.9.3
botocore (transitive) 1.34.22 1.34.37
celery (transitive) 5.2.7 5.3.6
cryptography (transitive) 42.0.0 42.0.2
django-autocomplete-light (transitive) 3.9.4 3.9.7
django-crispy-forms (transitive) 2.0 2.1
django-db-file-storage (transitive) 0.5.5 0.5.6.1
django-debug-toolbar 4.2.0 4.3.0
django-environ (transitive) 0.10.0 0.11.2
django-iconify (transitive) 0.1.1 0.4
django-plugins-bihealth 0.4.0 0.5.2
django-postgres-copy 2.3.7 2.7.4
django-pydantic-field 0.3.0 0.3.3
docutils (transitive) 0.18.1 0.20.1
elementpath (transitive) 4.1.5 4.2.0
ipython (dev,transitive) 8.20.0 8.21.0
markdown (transitive) 3.4.1 3.5.2
markupsafe (transitive) 2.1.4 2.1.5
multidict (transitive) 6.0.4 6.0.5
numpy 1.26.3 1.26.4
platformdirs (dev,transitive) 4.1.0 4.2.0
pyflakes (dev,transitive) 3.1.0 3.2.0
pysaml2 (transitive) 7.4.2 7.5.0
referencing (transitive) 0.32.1 0.33.0
requests-http-signature 0.2.0 0.7.1
sentry-sdk 1.39.2 1.40.2
urllib3 (transitive) 2.0.7 2.2.0
versioneer (transitive) 0.28 0.29
wheel (transitive) 0.40.0 0.42.0

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@stolpeo stolpeo merged commit 0c3fb1c into main Feb 8, 2024
16 checks passed
@stolpeo stolpeo deleted the 947-exomiser-parameters-are-wrong branch February 8, 2024 11:42
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Exomiser parameters are wrong
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