From 6b086eb440f426092bdbc5e64154357866cac93b Mon Sep 17 00:00:00 2001
From: varfish-bot <138480089+varfish-bot@users.noreply.github.com>
Date: Fri, 23 Aug 2024 10:42:52 +0200
Subject: [PATCH] chore(main): release 0.1.0

---
 CHANGELOG.md | 168 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 168 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 19b5badfb..3c011a874 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -93,6 +93,174 @@
 - Removing template settings in quality form tab (#825).
 - Removing gene blocklist from vue filter app (#823).
 
+## 0.1.0 (2024-08-23)
+
+
+### Features
+
+* add a flag for incidental findings ([#1121](https://github.com/varfish-org/varfish-server/issues/1121)) ([#1466](https://github.com/varfish-org/varfish-server/issues/1466)) ([04bd4f6](https://github.com/varfish-org/varfish-server/commit/04bd4f6f4b84f39b8daf6c72a42371178c96aef1))
+* add clear button for gene selection ([#1580](https://github.com/varfish-org/varfish-server/issues/1580)) ([#1626](https://github.com/varfish-org/varfish-server/issues/1626)) ([6a308f5](https://github.com/varfish-org/varfish-server/commit/6a308f5dfde372330f3880482b5e98a8948cd550))
+* add manage.py initdev command ([#1767](https://github.com/varfish-org/varfish-server/issues/1767)) ([#1768](https://github.com/varfish-org/varfish-server/issues/1768)) ([f249d93](https://github.com/varfish-org/varfish-server/commit/f249d9390a1138046eb41129564557c347122b43))
+* add settings export and import to vue sv interface ([#1453](https://github.com/varfish-org/varfish-server/issues/1453)) ([#1456](https://github.com/varfish-org/varfish-server/issues/1456)) ([6da6f43](https://github.com/varfish-org/varfish-server/commit/6da6f4371ca59533a955194b8ef92784ad7df8fb))
+* add support for importing per-case seqvar VCF ([#1048](https://github.com/varfish-org/varfish-server/issues/1048)) ([#1155](https://github.com/varfish-org/varfish-server/issues/1155)) ([f2541e1](https://github.com/varfish-org/varfish-server/commit/f2541e105ae3b9128bb5147ccbe552c106466962))
+* adding cases_analysis module ([#1735](https://github.com/varfish-org/varfish-server/issues/1735)) ([#1739](https://github.com/varfish-org/varfish-server/issues/1739)) ([7ac94eb](https://github.com/varfish-org/varfish-server/commit/7ac94eb9c4406fc0e4ef98a6fa39dcf2b9e933eb))
+* adding persistent variant annotation ([#1185](https://github.com/varfish-org/varfish-server/issues/1185)) ([#1198](https://github.com/varfish-org/varfish-server/issues/1198)) ([0b428a0](https://github.com/varfish-org/varfish-server/commit/0b428a0b3ae713cccff33969982f16c0a16db85f))
+* adding seqvars module ([#1737](https://github.com/varfish-org/varfish-server/issues/1737)) ([#1761](https://github.com/varfish-org/varfish-server/issues/1761)) ([4bab348](https://github.com/varfish-org/varfish-server/commit/4bab3481644875ae187c091e8438d3020b54f5ba))
+* adjust varfish-server to unified gnomAD SV dbs ([#1395](https://github.com/varfish-org/varfish-server/issues/1395)) ([#1397](https://github.com/varfish-org/varfish-server/issues/1397)) ([5f20f68](https://github.com/varfish-org/varfish-server/commit/5f20f6809746b750068ddad746022a37c0f3ecbe))
+* allow to see flags for same variant from other cases ([#733](https://github.com/varfish-org/varfish-server/issues/733)) ([#1531](https://github.com/varfish-org/varfish-server/issues/1531)) ([e5c12e4](https://github.com/varfish-org/varfish-server/commit/e5c12e45dca9d70d450f3c59920e27b69ecbc8c2))
+* allow using secret files for secrets ([#1257](https://github.com/varfish-org/varfish-server/issues/1257)) ([#1258](https://github.com/varfish-org/varfish-server/issues/1258)) ([4ad84ac](https://github.com/varfish-org/varfish-server/commit/4ad84ac3d8d9908cf1bd54438cd3c5912a2e9ad5))
+* AUTH parameters for TLS encrypted LDAP ([#1245](https://github.com/varfish-org/varfish-server/issues/1245)) ([#1246](https://github.com/varfish-org/varfish-server/issues/1246)) ([9b5d507](https://github.com/varfish-org/varfish-server/commit/9b5d507c581058ab8a5f5809173ca830f45af108))
+* change label of final causativereported to final report ([#665](https://github.com/varfish-org/varfish-server/issues/665)) ([#1349](https://github.com/varfish-org/varfish-server/issues/1349)) ([b0bc5fc](https://github.com/varfish-org/varfish-server/commit/b0bc5fcd602de16c38bd1f4b1607c0f67b48af88))
+* change types of id column and sequence for large tables ([#462](https://github.com/varfish-org/varfish-server/issues/462)) ([#1350](https://github.com/varfish-org/varfish-server/issues/1350)) ([9d63c7c](https://github.com/varfish-org/varfish-server/commit/9d63c7cef9dfc699c8bb32e3ab6c87c34ed84e2e))
+* command to delete invalid queries with invalid settings ([#1807](https://github.com/varfish-org/varfish-server/issues/1807)) ([#1855](https://github.com/varfish-org/varfish-server/issues/1855)) ([9b7f085](https://github.com/varfish-org/varfish-server/commit/9b7f085e711e8d75d06727b686f42599c799fca8))
+* create query from presets prepared query ([#1919](https://github.com/varfish-org/varfish-server/issues/1919)) ([d87b225](https://github.com/varfish-org/varfish-server/commit/d87b2252b8670690b8b4116f6bd9dfabe2d0b417))
+* delete clinvar_export app ([#1664](https://github.com/varfish-org/varfish-server/issues/1664)) ([#1762](https://github.com/varfish-org/varfish-server/issues/1762)) ([e75275c](https://github.com/varfish-org/varfish-server/commit/e75275c48bd1ac1ae127ef8d5481800c75d38617))
+* enable opening variant details in separate browser tab ([#1886](https://github.com/varfish-org/varfish-server/issues/1886)) ([#1903](https://github.com/varfish-org/varfish-server/issues/1903)) ([521fcc8](https://github.com/varfish-org/varfish-server/commit/521fcc8fcc3baacfc214141c347bb43efadf57e1))
+* extend models and API schema for worker output ([#1872](https://github.com/varfish-org/varfish-server/issues/1872)) ([#1873](https://github.com/varfish-org/varfish-server/issues/1873)) ([a6dcac2](https://github.com/varfish-org/varfish-server/commit/a6dcac24fd94c71b662964d926708e22b01d34d4))
+* further integration of seqvars query UI ([#1917](https://github.com/varfish-org/varfish-server/issues/1917)) ([b1678ce](https://github.com/varfish-org/varfish-server/commit/b1678cea18788bd62db193aa49e1ef85ce5ea718))
+* genotype choice enabled and non_het ([#1815](https://github.com/varfish-org/varfish-server/issues/1815)) ([#1817](https://github.com/varfish-org/varfish-server/issues/1817)) ([06a7dd0](https://github.com/varfish-org/varfish-server/commit/06a7dd07d0b6971e1169309c77e037be2fdbc015))
+* hemizygous count is not displayed in varfish variant detail ([#1](https://github.com/varfish-org/varfish-server/issues/1)… ([#1860](https://github.com/varfish-org/varfish-server/issues/1860)) ([066e2f9](https://github.com/varfish-org/varfish-server/commit/066e2f9a4eae4f71a9211d1fa8be7ac7f7a948b8))
+* hgmd pro link out missing in the vue interface ([#1632](https://github.com/varfish-org/varfish-server/issues/1632)) ([#1677](https://github.com/varfish-org/varfish-server/issues/1677)) ([f98c060](https://github.com/varfish-org/varfish-server/commit/f98c0609c72bfde8d9608d20990bbdd4fc27babb))
+* implement seqvars presets editor ([#1763](https://github.com/varfish-org/varfish-server/issues/1763)) ([#1857](https://github.com/varfish-org/varfish-server/issues/1857)) ([98421e9](https://github.com/varfish-org/varfish-server/commit/98421e9988ecb817e37f1c4ec26aaf2db15c4bcd))
+* improving folding of left menu ([#1877](https://github.com/varfish-org/varfish-server/issues/1877)) ([#1881](https://github.com/varfish-org/varfish-server/issues/1881)) ([7591170](https://github.com/varfish-org/varfish-server/commit/75911704a6746cb29ceffbae35a7c5c467089883))
+* indicate clicked variant when returning from variant details ([#1526](https://github.com/varfish-org/varfish-server/issues/1526)) ([#1561](https://github.com/varfish-org/varfish-server/issues/1561)) ([c4bc4ef](https://github.com/varfish-org/varfish-server/commit/c4bc4efa9dea01d3763af592655f5fa5a15d1bcb))
+* initial set of seqvar stores based on code generated from OpenAPI ([#1765](https://github.com/varfish-org/varfish-server/issues/1765)) ([#1769](https://github.com/varfish-org/varfish-server/issues/1769)) ([ae9c1f3](https://github.com/varfish-org/varfish-server/commit/ae9c1f3fe36f1b1da2b3b7a29c0e9af2132da97d))
+* initial version of seqvar filtration screens in storybook ([#1745](https://github.com/varfish-org/varfish-server/issues/1745)) ([c73ad2b](https://github.com/varfish-org/varfish-server/commit/c73ad2b3d7b297045a82b5d2307ed92ed7f81479))
+* integrate seqvar details page from REEV ([#1300](https://github.com/varfish-org/varfish-server/issues/1300)) ([#1369](https://github.com/varfish-org/varfish-server/issues/1369)) ([a8f6da1](https://github.com/varfish-org/varfish-server/commit/a8f6da17a3862724a401d14a59c4d7eec70d43a9))
+* integration of drf-spectacular for OpenAPI schema generation ([#1405](https://github.com/varfish-org/varfish-server/issues/1405)) ([53a972a](https://github.com/varfish-org/varfish-server/commit/53a972a1f3a0a8eac640277303c5ea4197cc9767))
+* integration of seqvars query interface (no 2) ([#1891](https://github.com/varfish-org/varfish-server/issues/1891)) ([9f088b7](https://github.com/varfish-org/varfish-server/commit/9f088b77bcc1713e02cf921016cf8e20a58a02fd))
+* integration of strucvars from REEV ([#1300](https://github.com/varfish-org/varfish-server/issues/1300)) ([#1379](https://github.com/varfish-org/varfish-server/issues/1379)) ([c596e0c](https://github.com/varfish-org/varfish-server/commit/c596e0c53c9625abe30f02e18cf4334f1e7d12c9))
+* integration of worker "seqvars ingest" ([#1189](https://github.com/varfish-org/varfish-server/issues/1189)) ([ead404a](https://github.com/varfish-org/varfish-server/commit/ead404a5f203e57f5c9410b1bf1b48ed200830b3))
+* integration of worker "strucvars ingest" ([#1190](https://github.com/varfish-org/varfish-server/issues/1190)) ([79cc5e7](https://github.com/varfish-org/varfish-server/commit/79cc5e71b02791c14b8079c810f470de753b6088))
+* keep table after viewing variant details and going back to the variant table ([#1273](https://github.com/varfish-org/varfish-server/issues/1273)) ([#1464](https://github.com/varfish-org/varfish-server/issues/1464)) ([d1f793c](https://github.com/varfish-org/varfish-server/commit/d1f793cdc212c436a70b251c36c0d4ad9ab6dab0))
+* make omim search case insensitive ([#1788](https://github.com/varfish-org/varfish-server/issues/1788)) ([#1806](https://github.com/varfish-org/varfish-server/issues/1806)) ([95bb7ce](https://github.com/varfish-org/varfish-server/commit/95bb7ce958fc34b64ed9b4ff5f4a35862c2ddbfc))
+* make Vue3 frontend a true SPA ([#1770](https://github.com/varfish-org/varfish-server/issues/1770)) ([#1771](https://github.com/varfish-org/varfish-server/issues/1771)) ([d65e2a6](https://github.com/varfish-org/varfish-server/commit/d65e2a68b42d80f50542eaa368b401fbb8ce2eaa))
+* phenotype&pathogenicity prio filter ([#1830](https://github.com/varfish-org/varfish-server/issues/1830)) ([1fa8a24](https://github.com/varfish-org/varfish-server/commit/1fa8a2469f0debb9b71018bc2e1bf852edb35407))
+* provide acmg classification support for svs cnvs ([#469](https://github.com/varfish-org/varfish-server/issues/469)) ([#1643](https://github.com/varfish-org/varfish-server/issues/1643)) ([e6a9b44](https://github.com/varfish-org/varfish-server/commit/e6a9b444477338855f8e66c8931dbeacd1c568f1))
+* qc values thresholds should be adjustable ([#1530](https://github.com/varfish-org/varfish-server/issues/1530)) ([#1644](https://github.com/varfish-org/varfish-server/issues/1644)) ([beed42c](https://github.com/varfish-org/varfish-server/commit/beed42c1880af30564d12edc29362fb7fcf93db1))
+* removal of dependencies to geneinfo app ([#1635](https://github.com/varfish-org/varfish-server/issues/1635)) ([#1719](https://github.com/varfish-org/varfish-server/issues/1719)) ([48c1728](https://github.com/varfish-org/varfish-server/commit/48c17282b3fdce55cddccf0939655ebfe75104ab))
+* remove necessity nltk data download ([#1259](https://github.com/varfish-org/varfish-server/issues/1259)) ([#1269](https://github.com/varfish-org/varfish-server/issues/1269)) ([c10a37f](https://github.com/varfish-org/varfish-server/commit/c10a37fb1a089d9670eb9c4374b721e57ea6cb6e))
+* remove old filter features ([#739](https://github.com/varfish-org/varfish-server/issues/739)) ([#1628](https://github.com/varfish-org/varfish-server/issues/1628)) ([1ec5b3e](https://github.com/varfish-org/varfish-server/commit/1ec5b3e990372873282ba6ecd1bed576ab3ab243))
+* remove references to old hgnc gene table in varfish ([#1551](https://github.com/varfish-org/varfish-server/issues/1551)) ([#1633](https://github.com/varfish-org/varfish-server/issues/1633)) ([dbe4fd4](https://github.com/varfish-org/varfish-server/commit/dbe4fd4352eae8a96d69243c822ba2ceae9cb9ce))
+* searching for cases is painful ([#1645](https://github.com/varfish-org/varfish-server/issues/1645)) ([#1802](https://github.com/varfish-org/varfish-server/issues/1802)) ([5064a27](https://github.com/varfish-org/varfish-server/commit/5064a27ed8547e25d2529ad7e3c4b200fa4ceada))
+* searching for cases only works with exact match ([#1252](https://github.com/varfish-org/varfish-server/issues/1252)) ([#1270](https://github.com/varfish-org/varfish-server/issues/1270)) ([00edd75](https://github.com/varfish-org/varfish-server/commit/00edd75387564a79a8b58134265addad070ebec7))
+* separator for gene list or hpo terms ([#1196](https://github.com/varfish-org/varfish-server/issues/1196)) ([#1480](https://github.com/varfish-org/varfish-server/issues/1480)) ([ba73b99](https://github.com/varfish-org/varfish-server/commit/ba73b9959c2bd8acbf576c3a4e18ee926058d620))
+* seqvar item modified & revert  ([#1818](https://github.com/varfish-org/varfish-server/issues/1818)) ([c885421](https://github.com/varfish-org/varfish-server/commit/c8854214fe15c0c97fa6bc34230eb2f3272883eb))
+* seqvar panels ([#1883](https://github.com/varfish-org/varfish-server/issues/1883)) ([9d18422](https://github.com/varfish-org/varfish-server/commit/9d18422001108e7fc70bf65c5f5dcc9177e344bd))
+* seqvar quality, clinvar & locus filters ([#1856](https://github.com/varfish-org/varfish-server/issues/1856)) ([cf00085](https://github.com/varfish-org/varfish-server/commit/cf00085630a4e59c6481b349a1a5aaa1e45ae78b))
+* seqvars data-table ([#1870](https://github.com/varfish-org/varfish-server/issues/1870)) ([d5cb17b](https://github.com/varfish-org/varfish-server/commit/d5cb17bf7f6f87333c15c477d6ce99f9d43e0684))
+* seqvars effects filter ([#1833](https://github.com/varfish-org/varfish-server/issues/1833)) ([38febb1](https://github.com/varfish-org/varfish-server/commit/38febb1c55df3243054fbeb45b34ab2cc132e1eb))
+* seqvars summary item show modified + revert ([#1890](https://github.com/varfish-org/varfish-server/issues/1890)) ([5f1e1fd](https://github.com/varfish-org/varfish-server/commit/5f1e1fdbcefabcb08497524b097e899af1b5f6f5))
+* set default query preset for project ([#1478](https://github.com/varfish-org/varfish-server/issues/1478)) ([#1611](https://github.com/varfish-org/varfish-server/issues/1611)) ([a1ab0ff](https://github.com/varfish-org/varfish-server/commit/a1ab0ff55567f1292238e92301102677cc2bbaf1))
+* set default query preset for project ([#1478](https://github.com/varfish-org/varfish-server/issues/1478)) ([#1622](https://github.com/varfish-org/varfish-server/issues/1622)) ([b28ca91](https://github.com/varfish-org/varfish-server/commit/b28ca91f18c55e3fb6bd306fa664fe5f975ed5fd))
+* set order of quick presets in dropdown ([#1479](https://github.com/varfish-org/varfish-server/issues/1479)) ([#1794](https://github.com/varfish-org/varfish-server/issues/1794)) ([5d074a5](https://github.com/varfish-org/varfish-server/commit/5d074a59a5478a7da3cf7d6f065bfede5dd55bdc))
+* show flags comments from other cases in variant result table ([#1564](https://github.com/varfish-org/varfish-server/issues/1564)) ([#1660](https://github.com/varfish-org/varfish-server/issues/1660)) ([687f0ca](https://github.com/varfish-org/varfish-server/commit/687f0ca45f7c6139d592b8d63784fb282fb1f30d))
+* small variant artifact button should have hover description ([#1118](https://github.com/varfish-org/varfish-server/issues/1118)) ([#1477](https://github.com/varfish-org/varfish-server/issues/1477)) ([64e979a](https://github.com/varfish-org/varfish-server/commit/64e979a00ec5ed8cb3cceeacfed7ae69cad9b7ad))
+* split frequency type further ([#1784](https://github.com/varfish-org/varfish-server/issues/1784)) ([3c325fe](https://github.com/varfish-org/varfish-server/commit/3c325fe892edde0a37da9030418392018439c93b))
+* splitting recessive_parent into recessive_{father,mother} ([#1867](https://github.com/varfish-org/varfish-server/issues/1867)) ([#1868](https://github.com/varfish-org/varfish-server/issues/1868)) ([c5fb09b](https://github.com/varfish-org/varfish-server/commit/c5fb09b96b1c2842469abb4b39e2e30947d06404))
+* start integrating seqvars filtration with frontend ([#1882](https://github.com/varfish-org/varfish-server/issues/1882)) ([#1889](https://github.com/varfish-org/varfish-server/issues/1889)) ([5199606](https://github.com/varfish-org/varfish-server/commit/5199606145486b4d632195f0160fa27295fc4985))
+* switching to builtin OpenAPI generation from drf ([#1734](https://github.com/varfish-org/varfish-server/issues/1734)) ([9561fb4](https://github.com/varfish-org/varfish-server/commit/9561fb4d52f1bde2225fb4c333cf7195e230b5c6))
+* viewing comments of variants in other samples ([#964](https://github.com/varfish-org/varfish-server/issues/964)) ([#1508](https://github.com/varfish-org/varfish-server/issues/1508)) ([bbd1348](https://github.com/varfish-org/varfish-server/commit/bbd134865f9ceea602ac18cd634264ee2ba58e54))
+
+
+### Bug Fixes
+
+* __vite_mapDeps not defined issue ([#1373](https://github.com/varfish-org/varfish-server/issues/1373)) ([4b226f8](https://github.com/varfish-org/varfish-server/commit/4b226f8ba102a5b43b7eba98b2c946c4faec579e))
+* adapting strucvar details to latest annonars changes ([#1229](https://github.com/varfish-org/varfish-server/issues/1229)) ([#1232](https://github.com/varfish-org/varfish-server/issues/1232)) ([b472a7c](https://github.com/varfish-org/varfish-server/commit/b472a7c5d134a586b05051294e009e66ab168d3a))
+* Add param to igv jump ([#1406](https://github.com/varfish-org/varfish-server/issues/1406)) ([2903065](https://github.com/varfish-org/varfish-server/commit/2903065d41a155125bf514681123ab62263e52eb))
+* adding large panels causes incorrect linting errors ([#1184](https://github.com/varfish-org/varfish-server/issues/1184)) ([#1250](https://github.com/varfish-org/varfish-server/issues/1250)) ([feb0885](https://github.com/varfish-org/varfish-server/commit/feb08852e024ed65373aaa77c1f83ab60c29f0b2))
+* adding missing references to category presets ([#1793](https://github.com/varfish-org/varfish-server/issues/1793)) ([ec715ce](https://github.com/varfish-org/varfish-server/commit/ec715cec29deaa01a761008cd9008bdafa87dde9))
+* adjust mt chromosome in igv calls ([#1562](https://github.com/varfish-org/varfish-server/issues/1562)) ([#1563](https://github.com/varfish-org/varfish-server/issues/1563)) ([a28a279](https://github.com/varfish-org/varfish-server/commit/a28a279603d7d621b1454cfcda80f454f982d512))
+* adjusting frontend code to changes in backend ([#1224](https://github.com/varfish-org/varfish-server/issues/1224), [#1225](https://github.com/varfish-org/varfish-server/issues/1225)) ([#1228](https://github.com/varfish-org/varfish-server/issues/1228)) ([0537ed0](https://github.com/varfish-org/varfish-server/commit/0537ed027066f292da801dc63153f663109399a8))
+* allow changing the number of rows and switching pages in structural variants table ([#1268](https://github.com/varfish-org/varfish-server/issues/1268)) ([#1309](https://github.com/varfish-org/varfish-server/issues/1309)) ([5c964af](https://github.com/varfish-org/varfish-server/commit/5c964af0a4291a56d671aee20925b266175b9c79))
+* bump rfl to get bihealth/reev-frontend-lib[#163](https://github.com/varfish-org/varfish-server/issues/163) ([#1422](https://github.com/varfish-org/varfish-server/issues/1422)) ([85f1725](https://github.com/varfish-org/varfish-server/commit/85f1725ad522a4be288bfac7dec1c7c1e2caa6c8))
+* bump rfl to get bihealth/reev-frontend-lib[#164](https://github.com/varfish-org/varfish-server/issues/164) ([#1423](https://github.com/varfish-org/varfish-server/issues/1423)) ([c53a830](https://github.com/varfish-org/varfish-server/commit/c53a830101ec6d766335cf2a715ccda357c6d348))
+* caller splitting for old cases ([#1741](https://github.com/varfish-org/varfish-server/issues/1741)) ([#1742](https://github.com/varfish-org/varfish-server/issues/1742)) ([a9d9416](https://github.com/varfish-org/varfish-server/commit/a9d9416fe7e230eeaa0f7fb2ff627504f8867fe0))
+* case details annotations tables unexpectedly empty in some cases ([#1312](https://github.com/varfish-org/varfish-server/issues/1312)) ([#1313](https://github.com/varfish-org/varfish-server/issues/1313)) ([4d4fa10](https://github.com/varfish-org/varfish-server/commit/4d4fa105c14e14c21b180bd97dbf53b24be91c5b))
+* case overview diseases terms input missing omim ([#1759](https://github.com/varfish-org/varfish-server/issues/1759)) ([#1785](https://github.com/varfish-org/varfish-server/issues/1785)) ([9f55cd5](https://github.com/varfish-org/varfish-server/commit/9f55cd59615f3a54f6e6897d073818b2f2f64470))
+* case search still broken ([#1803](https://github.com/varfish-org/varfish-server/issues/1803)) ([#1804](https://github.com/varfish-org/varfish-server/issues/1804)) ([888a952](https://github.com/varfish-org/varfish-server/commit/888a952bd5b48a31cbf7fbdbf40befd3b826e64d))
+* changed query presets only shown in filtering after page refresh ([#1557](https://github.com/varfish-org/varfish-server/issues/1557)) ([#1624](https://github.com/varfish-org/varfish-server/issues/1624)) ([dc66b1a](https://github.com/varfish-org/varfish-server/commit/dc66b1a61652961f4d2f46f602cfe72a05182ec6))
+* clicking variant modal sidebar does not work ([#1849](https://github.com/varfish-org/varfish-server/issues/1849)) ([#1869](https://github.com/varfish-org/varfish-server/issues/1869)) ([c187a1d](https://github.com/varfish-org/varfish-server/commit/c187a1dd369a98a673d9794173ec7025d66f1a4a))
+* cloning a user defined quick preset does not work ([#1482](https://github.com/varfish-org/varfish-server/issues/1482)) ([#1625](https://github.com/varfish-org/varfish-server/issues/1625)) ([f0e2ea8](https://github.com/varfish-org/varfish-server/commit/f0e2ea8d02a3359c80f222b32db310866e786403))
+* cloning query presets results in blank preset ([#1837](https://github.com/varfish-org/varfish-server/issues/1837)) ([#1874](https://github.com/varfish-org/varfish-server/issues/1874)) ([e555686](https://github.com/varfish-org/varfish-server/commit/e555686f2b6fc962b92fd0114f290e0957fdafa3))
+* coerce FORMAT/cn to int when writing SV VCF ([#1743](https://github.com/varfish-org/varfish-server/issues/1743)) ([#1744](https://github.com/varfish-org/varfish-server/issues/1744)) ([22ed8bd](https://github.com/varfish-org/varfish-server/commit/22ed8bd97bccdf9d0a2a1b821e004fae54dd6e4d))
+* collapsable side menu icon not intuitive ([#1875](https://github.com/varfish-org/varfish-server/issues/1875)) ([#1876](https://github.com/varfish-org/varfish-server/issues/1876)) ([b08dbb2](https://github.com/varfish-org/varfish-server/commit/b08dbb243c0d10e39d867c5d790858240ec42f6a))
+* color of sv flags does not depend on summary status ([#1260](https://github.com/varfish-org/varfish-server/issues/1260)) ([#1325](https://github.com/varfish-org/varfish-server/issues/1325)) ([e5fb652](https://github.com/varfish-org/varfish-server/commit/e5fb65208894fe849e916614c1f8f4315c45fba3))
+* compatible with mehari 0.8 ([#1174](https://github.com/varfish-org/varfish-server/issues/1174)) ([fe5a3dd](https://github.com/varfish-org/varfish-server/commit/fe5a3dde74c5e32ca15959e964b5ec2bd1b3b99f))
+* complexity setting for filters missing in new interface ([#1853](https://github.com/varfish-org/varfish-server/issues/1853)) ([#1859](https://github.com/varfish-org/varfish-server/issues/1859)) ([44edb7e](https://github.com/varfish-org/varfish-server/commit/44edb7ec5a97da9b40442c3425287043511540e1))
+* current state of special result set ([#1377](https://github.com/varfish-org/varfish-server/issues/1377)) ([#1392](https://github.com/varfish-org/varfish-server/issues/1392)) ([5dbddde](https://github.com/varfish-org/varfish-server/commit/5dbddde7c8615b89b9390e63a0fc81b93454a12f))
+* dbsnp int to bigint ([#1370](https://github.com/varfish-org/varfish-server/issues/1370)) ([baa17b0](https://github.com/varfish-org/varfish-server/commit/baa17b07e05caa59854aa41ac98a20d7ff9f5312))
+* deleting a case broken ([#1162](https://github.com/varfish-org/varfish-server/issues/1162)) ([#1301](https://github.com/varfish-org/varfish-server/issues/1301)) ([0c2cf19](https://github.com/varfish-org/varfish-server/commit/0c2cf1996197dd678587841ff63266b020b57f17))
+* display of variant flagscommentsacmg counts are static always 0 ([#1376](https://github.com/varfish-org/varfish-server/issues/1376)) ([#1437](https://github.com/varfish-org/varfish-server/issues/1437)) ([dbfd897](https://github.com/varfish-org/varfish-server/commit/dbfd8976e89e815427084acdfc9816e6792226e7))
+* display SV gnomAD genomes counts, not exomes ([#1424](https://github.com/varfish-org/varfish-server/issues/1424)) ([f87b46e](https://github.com/varfish-org/varfish-server/commit/f87b46eeab5cf63ce2587159601abf4c2cf5b80d))
+* distance to next exon should be reset when selecting a new quick preset ([#1256](https://github.com/varfish-org/varfish-server/issues/1256)) ([#1324](https://github.com/varfish-org/varfish-server/issues/1324)) ([432d6ce](https://github.com/varfish-org/varfish-server/commit/432d6ce460c8c659591fc0d4349d475dc2e817d9))
+* effects all does not catch empty annotations ([#1578](https://github.com/varfish-org/varfish-server/issues/1578)) ([#1579](https://github.com/varfish-org/varfish-server/issues/1579)) ([6b8fc34](https://github.com/varfish-org/varfish-server/commit/6b8fc34de737801a37c2d49bba7dc8c98a56f0f1))
+* enable strucvar view cards again ([#1403](https://github.com/varfish-org/varfish-server/issues/1403)) ([cadd418](https://github.com/varfish-org/varfish-server/commit/cadd418da6a6e9db4d9f641920210b3bfbd7823c))
+* exomiser parameters are wrong ([#947](https://github.com/varfish-org/varfish-server/issues/947)) ([#1346](https://github.com/varfish-org/varfish-server/issues/1346)) ([0c3fb1c](https://github.com/varfish-org/varfish-server/commit/0c3fb1c94bdfcf8cbe04b21948c666f290b9950b))
+* file export mehari call is external ([#1535](https://github.com/varfish-org/varfish-server/issues/1535)) ([#1536](https://github.com/varfish-org/varfish-server/issues/1536)) ([e662764](https://github.com/varfish-org/varfish-server/commit/e6627640311cbbe2486de0576339615923d84d81))
+* fix server worker version ([#1909](https://github.com/varfish-org/varfish-server/issues/1909)) ([df37363](https://github.com/varfish-org/varfish-server/commit/df37363a37ef24ad14968947af6ebd61552cc80a))
+* frontend build fails on machines less than 32gb ram ([#1720](https://github.com/varfish-org/varfish-server/issues/1720)) ([#1721](https://github.com/varfish-org/varfish-server/issues/1721)) ([c4ab0d8](https://github.com/varfish-org/varfish-server/commit/c4ab0d8dc082d1d82a6642bb6679eae27fd69757))
+* gene allowlist validation inconsistent in front- and back-end ([#1532](https://github.com/varfish-org/varfish-server/issues/1532)) ([#1538](https://github.com/varfish-org/varfish-server/issues/1538)) ([8917534](https://github.com/varfish-org/varfish-server/commit/891753402192085e277d9297369f71cf28d9e588))
+* hpo terms not findable ([#1814](https://github.com/varfish-org/varfish-server/issues/1814)) ([#1829](https://github.com/varfish-org/varfish-server/issues/1829)) ([96ec15b](https://github.com/varfish-org/varfish-server/commit/96ec15b8c2568f28efe643bb56a25479b43c2acf))
+* igv linkout does not work for mitochondrial positions ([#1283](https://github.com/varfish-org/varfish-server/issues/1283)) ([#1559](https://github.com/varfish-org/varfish-server/issues/1559)) ([1806783](https://github.com/varfish-org/varfish-server/commit/180678382e428d0cc7d5eca78c0eb64351209676))
+* igv shows error for grch38 svs ([#1274](https://github.com/varfish-org/varfish-server/issues/1274)) ([#1323](https://github.com/varfish-org/varfish-server/issues/1323)) ([ac56b4e](https://github.com/varfish-org/varfish-server/commit/ac56b4e0ac90ce33ac0e8aa3fa3b1e2737a0b06b))
+* igvjs view on variant details page does not jump to sv position ([#1560](https://github.com/varfish-org/varfish-server/issues/1560)) ([#1659](https://github.com/varfish-org/varfish-server/issues/1659)) ([9332f9a](https://github.com/varfish-org/varfish-server/commit/9332f9a09252f89c5ad851111bf67eb59d1e76dd))
+* integration of worker latest version ([#1680](https://github.com/varfish-org/varfish-server/issues/1680)) ([ab441ff](https://github.com/varfish-org/varfish-server/commit/ab441ff89e8f129952994ff466b41611621ff912))
+* limit seqvar details to gene from result row ([#1380](https://github.com/varfish-org/varfish-server/issues/1380)) ([#1404](https://github.com/varfish-org/varfish-server/issues/1404)) ([a194921](https://github.com/varfish-org/varfish-server/commit/a194921446d94eca7e60400f2afaa34c7180b006))
+* make flags and comments for for SVs ([#1401](https://github.com/varfish-org/varfish-server/issues/1401)) ([252ca55](https://github.com/varfish-org/varfish-server/commit/252ca55433d8e3d5d185fad727f01783572a4ea2))
+* make Optional work with spectacular ([#1786](https://github.com/varfish-org/varfish-server/issues/1786)) ([d63f184](https://github.com/varfish-org/varfish-server/commit/d63f184592b13853a7ef302da342f7a4741fcc52))
+* mehari call ([#1199](https://github.com/varfish-org/varfish-server/issues/1199)) ([a43ebf4](https://github.com/varfish-org/varfish-server/commit/a43ebf4a67bf65815d0f63f5bb14b239dbd900ea))
+* mehari call ([#1202](https://github.com/varfish-org/varfish-server/issues/1202)) ([2a9e3ba](https://github.com/varfish-org/varfish-server/commit/2a9e3ba6723800554f372db12ce8da1819880960))
+* misleading no available data message on empty result sets ([#1275](https://github.com/varfish-org/varfish-server/issues/1275)) ([#1310](https://github.com/varfish-org/varfish-server/issues/1310)) ([2b16503](https://github.com/varfish-org/varfish-server/commit/2b1650316bf7f9a818ab3c5e736839dc33b11546))
+* previous query settings might interfer with current settings ([#1629](https://github.com/varfish-org/varfish-server/issues/1629)) ([#1661](https://github.com/varfish-org/varfish-server/issues/1661)) ([7bcc365](https://github.com/varfish-org/varfish-server/commit/7bcc3650ac091410a8d6fac9fee280abf2c8631a))
+* properly interpret Optional[] in seqvars types and API ([#1789](https://github.com/varfish-org/varfish-server/issues/1789)) ([#1790](https://github.com/varfish-org/varfish-server/issues/1790)) ([36da785](https://github.com/varfish-org/varfish-server/commit/36da785c15798f7d8f81733b97b72832fdab9beb))
+* properly load user annotations into stores ([#1197](https://github.com/varfish-org/varfish-server/issues/1197)) ([6bc4172](https://github.com/varfish-org/varfish-server/commit/6bc417213c3c2e1773d0ce20571ebaf285384325))
+* properly representing recessive for genotypes ([#1808](https://github.com/varfish-org/varfish-server/issues/1808)) ([8dbb5fb](https://github.com/varfish-org/varfish-server/commit/8dbb5fb2b60c745d1b2d10e2733ecfea486d301e))
+* properly reset factoryboy sequences when used with snapshot tests ([#1186](https://github.com/varfish-org/varfish-server/issues/1186)) ([0f641a2](https://github.com/varfish-org/varfish-server/commit/0f641a2dcf98e0924ecc6652c8a9d58b18fc9792))
+* pubtator store loading with missing hgnc id ([#1884](https://github.com/varfish-org/varfish-server/issues/1884)) ([#1887](https://github.com/varfish-org/varfish-server/issues/1887)) ([0dd8ea1](https://github.com/varfish-org/varfish-server/commit/0dd8ea1459a3019c9d648ff83a2be9f1e5195a5b))
+* query preset cannot add gene regions presets ([#1166](https://github.com/varfish-org/varfish-server/issues/1166)) ([#1457](https://github.com/varfish-org/varfish-server/issues/1457)) ([6bc5bfb](https://github.com/varfish-org/varfish-server/commit/6bc5bfbca67f573475c3581a6ae57d23e23a3e14))
+* query preset removing a quick preset does not remove preset ([#1165](https://github.com/varfish-org/varfish-server/issues/1165)) ([#1458](https://github.com/varfish-org/varfish-server/issues/1458)) ([e90e3a1](https://github.com/varfish-org/varfish-server/commit/e90e3a10f58a2f8136965e157af647369795acfd))
+* query presets cannot add new quick preset ([#1164](https://github.com/varfish-org/varfish-server/issues/1164)) ([#1459](https://github.com/varfish-org/varfish-server/issues/1459)) ([39603c9](https://github.com/varfish-org/varfish-server/commit/39603c9c887e1c43d4eb78b9fdac24965d9d760b))
+* query presets cannot add new quick preset ([#1164](https://github.com/varfish-org/varfish-server/issues/1164)) ([#1460](https://github.com/varfish-org/varfish-server/issues/1460)) ([e56ad93](https://github.com/varfish-org/varfish-server/commit/e56ad937daeb043371dd0124e3b5ed233c39ebd9))
+* query result sets not created on case import ([#1241](https://github.com/varfish-org/varfish-server/issues/1241)) ([#1242](https://github.com/varfish-org/varfish-server/issues/1242)) ([b5659a9](https://github.com/varfish-org/varfish-server/commit/b5659a95e0ee1df88ec243f72e545400439e125e))
+* Remove IGV prefixing ([#1284](https://github.com/varfish-org/varfish-server/issues/1284)) ([3a917fe](https://github.com/varfish-org/varfish-server/commit/3a917feb35809c7772e1d810e02fcc067046b7eb))
+* replace jannovar call in file export with mehari ([#1463](https://github.com/varfish-org/varfish-server/issues/1463)) ([#1512](https://github.com/varfish-org/varfish-server/issues/1512)) ([82235b8](https://github.com/varfish-org/varfish-server/commit/82235b8dd90b590de52a9b0eb28e65b73775dbec))
+* resolve pylance issue with subscription of dict ([#1187](https://github.com/varfish-org/varfish-server/issues/1187)) ([3a7fbe0](https://github.com/varfish-org/varfish-server/commit/3a7fbe0a37909f24f7ccac81aee02db8c76f9719))
+* results table loses sorting after variant details ([#1211](https://github.com/varfish-org/varfish-server/issues/1211)) ([#1832](https://github.com/varfish-org/varfish-server/issues/1832)) ([5a0f325](https://github.com/varfish-org/varfish-server/commit/5a0f325aeaad61b32ad05d3a9d1fe97ff4051aca))
+* resultset store issue ([#1209](https://github.com/varfish-org/varfish-server/issues/1209)) ([e56eac7](https://github.com/varfish-org/varfish-server/commit/e56eac7d347454aaad3e7a685b3035ff7447212f))
+* returning from sv details shows wrong result set ([#1438](https://github.com/varfish-org/varfish-server/issues/1438)) ([#1439](https://github.com/varfish-org/varfish-server/issues/1439)) ([1a8459d](https://github.com/varfish-org/varfish-server/commit/1a8459d925c792d3afc412f24d34ce6a27205882))
+* rollback mehari call ([#1204](https://github.com/varfish-org/varfish-server/issues/1204)) ([1ce636b](https://github.com/varfish-org/varfish-server/commit/1ce636b4f776ac7d6a51e1050a1a0a1515e5d622))
+* set order of quick presets in dropdown ([#1479](https://github.com/varfish-org/varfish-server/issues/1479)) ([#1838](https://github.com/varfish-org/varfish-server/issues/1838)) ([9b49acb](https://github.com/varfish-org/varfish-server/commit/9b49acbc85cd765bfb8e941454362bba34029687))
+* show visible response if user enters an invalid hpo term ([#1791](https://github.com/varfish-org/varfish-server/issues/1791)) ([#1819](https://github.com/varfish-org/varfish-server/issues/1819)) ([159a372](https://github.com/varfish-org/varfish-server/commit/159a372665743c5f067baf65a945c62c5a25a62a))
+* sort case search results ([#1810](https://github.com/varfish-org/varfish-server/issues/1810)) ([#1812](https://github.com/varfish-org/varfish-server/issues/1812)) ([f78c351](https://github.com/varfish-org/varfish-server/commit/f78c351dbf7e8e025fbbdef149fa51f6976bedcd))
+* special result row set not updating when flags are updated ([#1378](https://github.com/varfish-org/varfish-server/issues/1378)) ([#1398](https://github.com/varfish-org/varfish-server/issues/1398)) ([d7ab728](https://github.com/varfish-org/varfish-server/commit/d7ab7282b5aef3ed321fa7c8d26f7794940eefd5))
+* spectacular integration with pydantic field ([#1783](https://github.com/varfish-org/varfish-server/issues/1783)) ([b1fa2b5](https://github.com/varfish-org/varfish-server/commit/b1fa2b5ce7e82202b4e605095c0a9a9238d45b84))
+* structural variant worker call ([#1203](https://github.com/varfish-org/varfish-server/issues/1203)) ([d752480](https://github.com/varfish-org/varfish-server/commit/d75248035153150656ec7c89b992d82316e010ec))
+* strucvar filtration always run with grch37 ([#1271](https://github.com/varfish-org/varfish-server/issues/1271)) ([#1272](https://github.com/varfish-org/varfish-server/issues/1272)) ([c0a8fbc](https://github.com/varfish-org/varfish-server/commit/c0a8fbc665cac9078abfc3a921b6eda638f5a807))
+* suppress BAM QC table if BAM stats missing ([#1213](https://github.com/varfish-org/varfish-server/issues/1213)) ([6f0cfa0](https://github.com/varfish-org/varfish-server/commit/6f0cfa0e436ac0d72530fa9e214f3cf85f4b54ce))
+* sv results page shows previous results after sv details ([#1302](https://github.com/varfish-org/varfish-server/issues/1302)) ([#1303](https://github.com/varfish-org/varfish-server/issues/1303)) ([028e6e5](https://github.com/varfish-org/varfish-server/commit/028e6e53a4adeefae95f503583aa0ff2553352a2))
+* switch case import data port setting to type integer ([#1214](https://github.com/varfish-org/varfish-server/issues/1214)) ([ac9bb76](https://github.com/varfish-org/varfish-server/commit/ac9bb7663e7401b25688274a46bdab16a123d481))
+* table settings lost when returning from variant details 2 ([#1211](https://github.com/varfish-org/varfish-server/issues/1211)) ([#1839](https://github.com/varfish-org/varfish-server/issues/1839)) ([122a416](https://github.com/varfish-org/varfish-server/commit/122a416801f3c873ec672307bf3015ec1889470a))
+* table sorting settings not preserved ([#1212](https://github.com/varfish-org/varfish-server/issues/1212)) ([0157ea1](https://github.com/varfish-org/varfish-server/commit/0157ea118b361734d54e35d49ef417de2d45d07b))
+* timing issue when initializing pinia ([#1374](https://github.com/varfish-org/varfish-server/issues/1374)) ([64c99e6](https://github.com/varfish-org/varfish-server/commit/64c99e65f17770ec0f0427dfe406867af2a983e4))
+* ugprade rfl to adjust to latest annonars and ClinVar XML changes ([#1678](https://github.com/varfish-org/varfish-server/issues/1678)) ([#1679](https://github.com/varfish-org/varfish-server/issues/1679)) ([e209961](https://github.com/varfish-org/varfish-server/commit/e209961894c7608558bbb6a9deb8b1f4d2dcedfc))
+* update reev frontend lib for mt igv issue ([#1575](https://github.com/varfish-org/varfish-server/issues/1575)) ([#1576](https://github.com/varfish-org/varfish-server/issues/1576)) ([eca30d3](https://github.com/varfish-org/varfish-server/commit/eca30d3a4a4077f866a005e2dde8858bb453c4cf))
+* updated pipfile lock ([#1210](https://github.com/varfish-org/varfish-server/issues/1210)) ([6ab8ff5](https://github.com/varfish-org/varfish-server/commit/6ab8ff5a358e32510c6a02365ac5dcc7dcfb10cb))
+* variant details loading broken ([#1904](https://github.com/varfish-org/varfish-server/issues/1904)) ([#1905](https://github.com/varfish-org/varfish-server/issues/1905)) ([3a4a3bf](https://github.com/varfish-org/varfish-server/commit/3a4a3bf30aa4aa90129089234016e66b403f982a))
+* variant details not working for grch38 ([#1509](https://github.com/varfish-org/varfish-server/issues/1509)) ([#1524](https://github.com/varfish-org/varfish-server/issues/1524)) ([efeba9f](https://github.com/varfish-org/varfish-server/commit/efeba9ff2d11914d898c264e698fd0bbdee23e88))
+* variant icons leads to wrong postion on variant details page ([#1315](https://github.com/varfish-org/varfish-server/issues/1315)) ([#1465](https://github.com/varfish-org/varfish-server/issues/1465)) ([9d3d83b](https://github.com/varfish-org/varfish-server/commit/9d3d83b55ff562d0e6cb88740e545bf42ec58e91))
+* variant modal shifts around during loading ([#1850](https://github.com/varfish-org/varfish-server/issues/1850)) ([#1871](https://github.com/varfish-org/varfish-server/issues/1871)) ([b64a365](https://github.com/varfish-org/varfish-server/commit/b64a3659e4cb6c4841697a1a88d1c26cae9075d1))
+* variantvalidator api does not work ([#1851](https://github.com/varfish-org/varfish-server/issues/1851)) ([#1858](https://github.com/varfish-org/varfish-server/issues/1858)) ([41e4284](https://github.com/varfish-org/varfish-server/commit/41e42843e9c6220d0163cc0c8d6392b42b907bf4))
+* variantvalidator in variant details view broken ([#1747](https://github.com/varfish-org/varfish-server/issues/1747)) ([#1787](https://github.com/varfish-org/varfish-server/issues/1787)) ([69bae65](https://github.com/varfish-org/varfish-server/commit/69bae65db608e2d3cdc1d75e3cad72918214c205))
+* wrong genome build for igv visualization of sv ([#1511](https://github.com/varfish-org/varfish-server/issues/1511)) ([#1558](https://github.com/varfish-org/varfish-server/issues/1558)) ([6b1d6c9](https://github.com/varfish-org/varfish-server/commit/6b1d6c957222a5f26ff8924ca5a4fd8661ade8c9))
+* xlsx file export issues ([#1504](https://github.com/varfish-org/varfish-server/issues/1504)) ([#1505](https://github.com/varfish-org/varfish-server/issues/1505)) ([145e8b4](https://github.com/varfish-org/varfish-server/commit/145e8b4c112c71f902e1b2735c3ff4cf2a97c24b))
+
+
+### Documentation
+
+* fixing readthedocs documentation ([#1317](https://github.com/varfish-org/varfish-server/issues/1317)) ([575a946](https://github.com/varfish-org/varfish-server/commit/575a946d1ae17da12552b873240304b2fde2b3f1))
+* moving out dev docs ([#1698](https://github.com/varfish-org/varfish-server/issues/1698)) ([#1704](https://github.com/varfish-org/varfish-server/issues/1704)) ([b462b68](https://github.com/varfish-org/varfish-server/commit/b462b689f6df2252ab55ff89b20c8df1a54f7996))
+
 ## v1.1.4
 
 ### Full Change List