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env.example
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env.example
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# Postgres configuration ----------------------------------------------------
POSTGRES_USER=varfish
POSTGRES_PASSWORD=password
POSTGRES_DB=varfish
POSTGRES_HOST=postgres
# MinIO configuration -------------------------------------------------------
# NB: not exposed, no need to be super secret...
MINIO_ROOT_USER=AKIAIOSFODNN7EXAMPLE
MINIO_ROOT_PASSWORD=wJalrXUtnFEMI/K7MDENG/bPxRfiCYEXAMPLEKEY
# VarFish configuration -----------------------------------------------------
DATABASE_URL="postgresql://${POSTGRES_USER}:${POSTGRES_PASSWORD}@${POSTGRES_HOST}/${POSTGRES_DB}"
DJANGO_ALLOWED_HOSTS="*"
# DJANGO_SECRET_KEY="really.secret.key" # This must be secret.
DJANGO_SETTINGS_MODULE="config.settings.production"
CELERY_BROKER_URL=redis://redis:6379/0
VARFISH_ENABLE_JANNOVAR=1
VARFISH_JANNOVAR_REST_API_URL=http://jannovar:80/
VARFISH_ENABLE_EXOMISER_PRIORITISER=1
VARFISH_ENABLE_EXTRA_ANNOS=1
VARFISH_EXOMISER_PRIORITISER_API_URL=http://exomiser-rest-prioritiser:80/exomiser/api/prioritise/
VARFISH_USE_S3=1
AWS_ACCESS_KEY_ID=${MINIO_ROOT_USER}
AWS_SECRET_ACCESS_KEY=${MINIO_ROOT_PASSWORD}
AWS_STORAGE_BUCKET_NAME=varfish-server
AWS_S3_ENDPOINT_URL=http://minio:9000
# Enable experimental beacon site feature by default (has to be configured
# explicitely by the admin anyway).
VARFISH_ENABLE_BEACON_SITE=1
# JS and CSS downloaded from CDN.
PROJECTROLES_DISABLE_CDN_INCLUDES=1
# Extra: CADD REST API *****************************************************
# Use the following lines to enable variant prioritization using the
# CADD score. See the VarFish Server manual for installation instructions,
# in particular how to download the required data.
VARFISH_ENABLE_CADD=0
VARFISH_CADD_REST_API_URL=http://cadd-rest-api-server:8080
VARFISH_CADD_MAX_VARS=5000
# Docker entrypoint.sh configuration
GUNICORN_WORKERS=16