diff --git a/tests/hg19-chr22/Case_1_index.delly2.extra.vcf b/tests/hg19-chr22/Case_1_index.delly2.extra.vcf
index 636f556..789a7ee 100644
--- a/tests/hg19-chr22/Case_1_index.delly2.extra.vcf
+++ b/tests/hg19-chr22/Case_1_index.delly2.extra.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:fb043ca18572fdec932376841ea7d9e74c7d14ceb5c268646508756e9b1e8b96
-size 598
+oid sha256:a1af68128fa9e30afbb5d85c8681dd058e76e6b7c69dcd4164416139d3e995a0
+size 597
diff --git a/tests/hg19-chr22/Case_1_index.delly2.gts.tsv-expected b/tests/hg19-chr22/Case_1_index.delly2.gts.tsv-expected
index 3774d2b..535dd9a 100644
--- a/tests/hg19-chr22/Case_1_index.delly2.gts.tsv-expected
+++ b/tests/hg19-chr22/Case_1_index.delly2.gts.tsv-expected
@@ -1,2 +1,2 @@
 release	chromosome	chromosome_no	bin	chromosome2	chromosome_no2	bin2	pe_orientation	start	end	start_ci_left	start_ci_right	end_ci_left	end_ci_right	case_id	set_id	sv_uuid	callers	sv_type	sv_sub_type	info	num_hom_alt	num_hom_ref	num_het	num_hemi_alt	num_hemi_ref	genotype
-GRCh37	22	22	89	22	22	89	3to5	17400000	17700000	-29	29	-29	29	.	.	UUID	{"EMBL.DELLYv1.1.3"}	DEL	DEL	{"""affectedCarriers""":0,"""backgroundCarriers""":0,"""unaffectedCarriers""":0}	0	2	1	0	0	{"""Case_1_father-N1-DNA1-WGS1""":{"""cn""":2,"""ft""":["""LowQual"""],"""gq""":14,"""gt""":"""0/1""","""pec""":0,"""pev""":0,"""src""":34,"""srv""":4},"""Case_1_index-N1-DNA1-WGS1""":{"""cn""":2,"""gq""":35,"""gt""":"""0/0""","""pec""":0,"""pev""":0,"""src""":29,"""srv""":2},"""Case_1_mother-N1-DNA1-WGS1""":{"""cn""":2,"""gq""":67,"""gt""":"""0/0""","""pec""":0,"""pev""":0,"""src""":32,"""srv""":1}}
+GRCh37	22	22	89	22	22	89	3to5	17400000	17700000	-29	29	-29	29	.	.	UUID	{"DELLY2_SVv1.1.3"}	DEL	DEL	{"""affectedCarriers""":0,"""backgroundCarriers""":0,"""unaffectedCarriers""":0}	0	2	1	0	0	{"""Case_1_father-N1-DNA1-WGS1""":{"""cn""":2,"""ft""":["""LowQual"""],"""gq""":14,"""gt""":"""0/1""","""pec""":0,"""pev""":0,"""src""":34,"""srv""":4},"""Case_1_index-N1-DNA1-WGS1""":{"""cn""":2,"""gq""":35,"""gt""":"""0/0""","""pec""":0,"""pev""":0,"""src""":29,"""srv""":2},"""Case_1_mother-N1-DNA1-WGS1""":{"""cn""":2,"""gq""":67,"""gt""":"""0/0""","""pec""":0,"""pev""":0,"""src""":32,"""srv""":1}}
diff --git a/varfish-annotator-cli/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateSvsVcf.java b/varfish-annotator-cli/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateSvsVcf.java
index 1b2fe5e..0ef2fd3 100644
--- a/varfish-annotator-cli/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateSvsVcf.java
+++ b/varfish-annotator-cli/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateSvsVcf.java
@@ -628,18 +628,18 @@ private void annotateSvVcf(
     // Get list of filter values to skip.
     final ImmutableSet skipFilters = ImmutableSet.copyOf(args.getSkipFilters().split(","));
 
-    final String defaultSvMethod;
+    final String svMethod;
     if (callerSupport.getSvCaller() == SvCaller.GENERIC && !args.getDefaultSvMethod().equals(".")) {
-      defaultSvMethod = args.getDefaultSvMethod();
+      svMethod = args.getDefaultSvMethod();
     } else {
-      defaultSvMethod = callerSupport.getSvMethod(reader);
+      svMethod = callerSupport.getSvMethod(reader);
     }
 
     // Helpers for building record for `.gts.tsv` and `.feature-effects.tsv` records.
     final GtRecordBuilder gtRecordBuilder =
         new GtRecordBuilder(
             args.getRelease(),
-            defaultSvMethod,
+            svMethod,
             args.getOptOutFeatures(),
             args.getCaseId(),
             args.getSetId(),
diff --git a/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr1Test.java b/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr1Test.java
index e51aace..0b91e60 100644
--- a/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr1Test.java
+++ b/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr1Test.java
@@ -158,11 +158,11 @@ void testWithSingleton(boolean gzipOutput) throws IOException {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
-            + "GRCh37\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"EMBL.DELLYv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
-            + "GRCh37\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
+            + "GRCh37\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
+            + "GRCh37\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"DELLY2_SVv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
+            + "GRCh37\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -193,11 +193,11 @@ void testWithTrio(boolean gzipOutput) throws IOException {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\"],\"\"\"gq\"\"\":127,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":11,\"\"\"pev\"\"\":4,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":57,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":19,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t2\t1\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":24,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":12,\"\"\"pev\"\"\":1,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":39,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t3\t0\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n"
-            + "GRCh37\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"EMBL.DELLYv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t3\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":43,\"\"\"srv\"\"\":8},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":157,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":56,\"\"\"srv\"\"\":8}}\n"
-            + "GRCh37\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n";
+            + "GRCh37\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\"],\"\"\"gq\"\"\":127,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":11,\"\"\"pev\"\"\":4,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":57,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":19,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t2\t1\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":24,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":12,\"\"\"pev\"\"\":1,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":39,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t3\t0\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n"
+            + "GRCh37\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"DELLY2_SVv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t3\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":43,\"\"\"srv\"\"\":8},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":157,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":56,\"\"\"srv\"\"\":8}}\n"
+            + "GRCh37\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -255,8 +255,8 @@ void testAnnotateHemiMale() throws Exception {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\tX\t23\t592\tX\t23\t592\t3to5\t1000000\t1001000\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t1\t0\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\tX\t23\t607\tX\t23\t607\t5to3\t3000000\t3001000\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t0\t1\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n";
+            + "GRCh37\tX\t23\t592\tX\t23\t592\t3to5\t1000000\t1001000\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t1\t0\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\tX\t23\t607\tX\t23\t607\t5to3\t3000000\t3001000\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t0\t1\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -286,8 +286,8 @@ void testAnnotateHemiFamily() throws Exception {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\tX\t23\t592\tX\t23\t592\t3to5\t1000000\t1001000\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t1\t1\t1\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\"],\"\"\"gq\"\"\":127,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":11,\"\"\"pev\"\"\":4,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":57,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":19,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\tX\t23\t607\tX\t23\t607\t5to3\t3000000\t3001000\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t1\t0\t0\t0\t2\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":24,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":12,\"\"\"pev\"\"\":1,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":39,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n";
+            + "GRCh37\tX\t23\t592\tX\t23\t592\t3to5\t1000000\t1001000\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t1\t1\t1\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\"],\"\"\"gq\"\"\":127,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":11,\"\"\"pev\"\"\":4,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":57,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":19,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\tX\t23\t607\tX\t23\t607\t5to3\t3000000\t3001000\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t1\t0\t0\t0\t2\t{\"\"\"NA12878\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"1/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":24,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":12,\"\"\"pev\"\"\":1,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"gq\"\"\":39,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -320,11 +320,11 @@ void testWithSingletonOptOutChrom2() throws IOException {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\t1\t1\t599\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t604\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t654\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
-            + "GRCh37\t1\t1\t780\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"EMBL.DELLYv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
-            + "GRCh37\t14\t14\t1299\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
+            + "GRCh37\t1\t1\t599\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t604\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t654\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
+            + "GRCh37\t1\t1\t780\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"DELLY2_SVv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
+            + "GRCh37\t14\t14\t1299\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -354,11 +354,11 @@ void testWithSingletonOptOutDbCounts() throws IOException {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tgenotype\n"
-            + "GRCh37\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
-            + "GRCh37\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"EMBL.DELLYv0.8.5\"}\tINV\tINV\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
-            + "GRCh37\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
+            + "GRCh37\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"amq\"\"\":40,\"\"\"anc\"\"\":1.0,\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
+            + "GRCh37\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"DELLY2_SVv0.8.5\"}\tINV\tINV\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
+            + "GRCh37\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{}\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -388,8 +388,8 @@ void testWithSingletonBnd() throws IOException {
             + "GRCh37\tthousand_genomes\tv5b.20130502\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\t1\t1\t2486\t2\t2\t2486\t5to3\t249239891\t249239891\t-248\t248\t-248\t248\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.1\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"2\"\"\",\"\"\"pos2\"\"\":10265,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":23,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":10,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh37\t2\t2\t585\t1\t1\t585\t3to5\t10265\t10265\t-248\t248\t-248\t248\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.1\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":249239891,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":23,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":10,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n";
+            + "GRCh37\t1\t1\t2486\t2\t2\t2486\t5to3\t249239891\t249239891\t-248\t248\t-248\t248\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.1\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"2\"\"\",\"\"\"pos2\"\"\":10265,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":23,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":10,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh37\t2\t2\t585\t1\t1\t585\t3to5\t10265\t10265\t-248\t248\t-248\t248\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.1\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":249239891,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":23,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":10,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
diff --git a/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr22Test.java b/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr22Test.java
index 1867a79..b4bd518 100644
--- a/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr22Test.java
+++ b/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf37Chr22Test.java
@@ -142,7 +142,7 @@ void testWithTrio(boolean gzipOutput) throws IOException {
             + "GRCh37\tvarfish-annotator-db\tfor-testing\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh37\t22\t22\t89\t22\t22\t89\t3to5\t17400000\t17700000\t-29\t29\t-29\t29\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv1.1.3\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t2\t1\t0\t0\t{\"\"\"Case_1_father-N1-DNA1-WGS1\"\"\":{\"\"\"cn\"\"\":2,\"\"\"ft\"\"\":[\"\"\"LowQual\"\"\"],\"\"\"gq\"\"\":14,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":34,\"\"\"srv\"\"\":4},\"\"\"Case_1_index-N1-DNA1-WGS1\"\"\":{\"\"\"cn\"\"\":2,\"\"\"gq\"\"\":35,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":29,\"\"\"srv\"\"\":2},\"\"\"Case_1_mother-N1-DNA1-WGS1\"\"\":{\"\"\"cn\"\"\":2,\"\"\"gq\"\"\":67,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":32,\"\"\"srv\"\"\":1}}\n";
+            + "GRCh37\t22\t22\t89\t22\t22\t89\t3to5\t17400000\t17700000\t-29\t29\t-29\t29\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv1.1.3\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t2\t1\t0\t0\t{\"\"\"Case_1_father-N1-DNA1-WGS1\"\"\":{\"\"\"cn\"\"\":2,\"\"\"ft\"\"\":[\"\"\"LowQual\"\"\"],\"\"\"gq\"\"\":14,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":34,\"\"\"srv\"\"\":4},\"\"\"Case_1_index-N1-DNA1-WGS1\"\"\":{\"\"\"cn\"\"\":2,\"\"\"gq\"\"\":35,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":29,\"\"\"srv\"\"\":2},\"\"\"Case_1_mother-N1-DNA1-WGS1\"\"\":{\"\"\"cn\"\"\":2,\"\"\"gq\"\"\":67,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":32,\"\"\"srv\"\"\":1}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n"
             + ".\t.\t00000000-0000-0000-0000-000000000000\t51816\tNM_017424.2\tTRUE\t{\"transcript_ablation\",\"coding_transcript_variant\"}\tENSG00000093072\tENST00000262607.3\tTRUE\t{\"transcript_ablation\",\"coding_transcript_variant\"}\n"
diff --git a/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf38Chr1Test.java b/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf38Chr1Test.java
index 9f5ace5..42e3821 100644
--- a/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf38Chr1Test.java
+++ b/varfish-annotator-cli/src/test/java/com/github/bihealth/varfish_annotator/annotate_svs/AnnotateDellyVcf38Chr1Test.java
@@ -117,11 +117,11 @@ void testWithSingleton(boolean gzipOutput) throws IOException {
             + "GRCh38\thgmd_public\tensembl_r104\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh38\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh38\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh38\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
-            + "GRCh38\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"EMBL.DELLYv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
-            + "GRCh38\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
+            + "GRCh38\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh38\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh38\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t0\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n"
+            + "GRCh38\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"DELLY2_SVv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7}}\n"
+            + "GRCh38\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t1\t0\t0\t{\"\"\"HG00102\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
@@ -146,11 +146,11 @@ void testWithTrio(boolean gzipOutput) throws IOException {
             + "GRCh38\thgmd_public\tensembl_r104\n";
     final String expectedGts =
         "release\tchromosome\tchromosome_no\tbin\tchromosome2\tchromosome_no2\tbin2\tpe_orientation\tstart\tend\tstart_ci_left\tstart_ci_right\tend_ci_left\tend_ci_right\tcase_id\tset_id\tsv_uuid\tcallers\tsv_type\tsv_sub_type\tinfo\tnum_hom_alt\tnum_hom_ref\tnum_het\tnum_hemi_alt\tnum_hemi_ref\tgenotype\n"
-            + "GRCh38\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"EMBL.DELLYv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\"],\"\"\"gq\"\"\":127,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":11,\"\"\"pev\"\"\":4,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":57,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":19,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh38\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"EMBL.DELLYv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t2\t1\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":24,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":12,\"\"\"pev\"\"\":1,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":39,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
-            + "GRCh38\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t3\t0\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n"
-            + "GRCh38\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"EMBL.DELLYv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t3\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":43,\"\"\"srv\"\"\":8},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":157,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":56,\"\"\"srv\"\"\":8}}\n"
-            + "GRCh38\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"EMBL.DELLYv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n";
+            + "GRCh38\t1\t1\t599\t1\t1\t599\t3to5\t1866283\t1867170\t-56\t56\t-56\t56\t.\t.\t00000000-0000-0000-0000-000000000000\t{\"DELLY2_SVv0.8.5\"}\tDEL\tDEL\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":22,\"\"\"pev\"\"\":6,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\"],\"\"\"gq\"\"\":127,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":11,\"\"\"pev\"\"\":4,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":57,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":19,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh38\t1\t1\t604\t1\t1\t604\t5to3\t2583294\t2583895\t-624\t624\t-624\t624\t.\t.\t00000000-0000-0000-0000-000000000001\t{\"DELLY2_SVv0.8.5\"}\tDUP\tDUP\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t2\t1\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":80,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":3,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":24,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":12,\"\"\"pev\"\"\":1,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":39,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":13,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":0,\"\"\"srv\"\"\":0}}\n"
+            + "GRCh38\t1\t1\t654\t14\t14\t654\t3to3\t9121445\t9121445\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000004\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"14\"\"\",\"\"\"pos2\"\"\":93713177,\"\"\"unaffectedCarriers\"\"\":0}\t0\t3\t0\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n"
+            + "GRCh38\t1\t1\t780\t1\t1\t780\t3to3\t25613682\t25614267\t-6\t6\t-6\t6\t.\t.\t00000000-0000-0000-0000-000000000002\t{\"DELLY2_SVv0.8.5\"}\tINV\tINV\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"unaffectedCarriers\"\"\":0}\t0\t0\t3\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"ft\"\"\":[\"\"\"MIN_PE_AAF\"\"\",\"\"\"MIN_PE_COUNT\"\"\",\"\"\"MIN_SR_AAF\"\"\",\"\"\"MIN_SR_COUNT\"\"\"],\"\"\"gq\"\"\":123,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":46,\"\"\"srv\"\"\":7},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":43,\"\"\"srv\"\"\":8},\"\"\"NA12892\"\"\":{\"\"\"gq\"\"\":157,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":0,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":56,\"\"\"srv\"\"\":8}}\n"
+            + "GRCh38\t14\t14\t1299\t1\t1\t1299\t3to3\t93713177\t93713177\t-3\t3\t-3\t3\t.\t.\t00000000-0000-0000-0000-000000000003\t{\"DELLY2_SVv0.8.5\"}\tBND\tBND\t{\"\"\"affectedCarriers\"\"\":0,\"\"\"backgroundCarriers\"\"\":0,\"\"\"chr2\"\"\":\"\"\"1\"\"\",\"\"\"pos2\"\"\":9121445,\"\"\"unaffectedCarriers\"\"\":0}\t0\t1\t2\t0\t0\t{\"\"\"NA12878\"\"\":{\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":50,\"\"\"pev\"\"\":17,\"\"\"src\"\"\":54,\"\"\"srv\"\"\":21},\"\"\"NA12891\"\"\":{\"\"\"gq\"\"\":93,\"\"\"gt\"\"\":\"\"\"0/0\"\"\",\"\"\"pec\"\"\":31,\"\"\"pev\"\"\":0,\"\"\"src\"\"\":31,\"\"\"srv\"\"\":0},\"\"\"NA12892\"\"\":{\"\"\"ft\"\"\":[\"\"\"MAX_PE_AAF\"\"\",\"\"\"MAX_PE_COUNT\"\"\",\"\"\"MAX_SR_AAF\"\"\",\"\"\"MAX_SR_COUNT\"\"\"],\"\"\"gq\"\"\":10000,\"\"\"gt\"\"\":\"\"\"0/1\"\"\",\"\"\"pec\"\"\":39,\"\"\"pev\"\"\":15,\"\"\"src\"\"\":37,\"\"\"srv\"\"\":18}}\n";
     final String expectedFeatureEffects =
         "case_id\tset_id\tsv_uuid\trefseq_gene_id\trefseq_transcript_id\trefseq_transcript_coding\trefseq_effect\tensembl_gene_id\tensembl_transcript_id\tensembl_transcript_coding\tensembl_effect\n";
     runTest(
diff --git a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.bnd.vcf b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.bnd.vcf
index 0674280..b349423 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.bnd.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.bnd.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:df0253a29c06e6bd142807ee3f33e3e4607a122a599f6ab69f8603f5319682e7
-size 7231
+oid sha256:a6ab3d08cb303c309e21bd7cdef9d6516f339525bd496828684ed2af881dc35d
+size 7230
diff --git a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.hemi.vcf b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.hemi.vcf
index b9710df..b77d4ea 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.hemi.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.hemi.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:cd8271b728d49ff4499850451d0e7df0ac9d08a1df52153291a39eeacb593116
-size 7497
+oid sha256:891f43ebc4c6149413f81fa8bd6121904b6c73e1f7858df4c679abea676b7816
+size 7495
diff --git a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.vcf b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.vcf
index 7a8a98c..b2e3672 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.HG00102.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:87af3d0aadb1e335fcdd1fbd44c41300715b9cce1b779248888c5b6600b78ab4
-size 8520
+oid sha256:3f4222fa4f32313ec1cbf0edc9e2eda8f553c968123d0e7979ce8d0128185aaf
+size 8516
diff --git a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.hemi.vcf b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.hemi.vcf
index 96f977b..ef1351a 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.hemi.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.hemi.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:78f11bafc10ac2a0c46ad465b919e9d7b74390c18442caec6c25c6f9f19a511c
-size 7727
+oid sha256:abd5f680a7043278631c4721c3a3f7954b6d129292d79088399c874e159856ae
+size 7725
diff --git a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.vcf b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.vcf
index d87dab0..2c17032 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch37-chr1/bwa.delly2.NA12878.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:27e9836a78421fd95e86c5319e5338400fa941833de47acdba56d295b97e3943
-size 9029
+oid sha256:40fcd4a07d5202596f78f57591c2365aa4348b43d246b29cd625a4b546725675
+size 9025
diff --git a/varfish-annotator-cli/src/test/resources/input/grch37-chr22/Case_1_index.delly2.gts.tsv-expected b/varfish-annotator-cli/src/test/resources/input/grch37-chr22/Case_1_index.delly2.gts.tsv-expected
index 2625866..e093197 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch37-chr22/Case_1_index.delly2.gts.tsv-expected
+++ b/varfish-annotator-cli/src/test/resources/input/grch37-chr22/Case_1_index.delly2.gts.tsv-expected
@@ -1,2 +1,2 @@
 release	chromosome	chromosome_no	bin	chromosome2	chromosome_no2	bin2	pe_orientation	start	end	start_ci_left	start_ci_right	end_ci_left	end_ci_right	case_id	set_id	sv_uuid	caller	sv_type	sv_sub_type	info	num_hom_alt	num_hom_ref	num_het	num_hemi_alt	num_hemi_ref	genotype
-GRCh37	22	22	89	22	22	89	3to5	17400000	17700000	-29	29	-29	29	.	.	UUID	EMBL.DELLYv1.1.3	DEL	DEL	{"""backgroundCarriers""":0,"""affectedCarriers""":0,"""unaffectedCarriers""":0}	0	2	1	0	0	{"""Case_1_father-N1-DNA1-WGS1""":{"""gt""":"""0/1""","""ft""":{"""LowQual"""},"""gq""":14,"""pec""":0,"""pev""":0,"""src""":34,"""srv""":4,"""cn""":2},"""Case_1_index-N1-DNA1-WGS1""":{"""gt""":"""0/0""","""gq""":35,"""pec""":0,"""pev""":0,"""src""":29,"""srv""":2,"""cn""":2},"""Case_1_mother-N1-DNA1-WGS1""":{"""gt""":"""0/0""","""gq""":67,"""pec""":0,"""pev""":0,"""src""":32,"""srv""":1,"""cn""":2}}
+GRCh37	22	22	89	22	22	89	3to5	17400000	17700000	-29	29	-29	29	.	.	UUID	DELLY2_SVv1.1.3	DEL	DEL	{"""backgroundCarriers""":0,"""affectedCarriers""":0,"""unaffectedCarriers""":0}	0	2	1	0	0	{"""Case_1_father-N1-DNA1-WGS1""":{"""gt""":"""0/1""","""ft""":{"""LowQual"""},"""gq""":14,"""pec""":0,"""pev""":0,"""src""":34,"""srv""":4,"""cn""":2},"""Case_1_index-N1-DNA1-WGS1""":{"""gt""":"""0/0""","""gq""":35,"""pec""":0,"""pev""":0,"""src""":29,"""srv""":2,"""cn""":2},"""Case_1_mother-N1-DNA1-WGS1""":{"""gt""":"""0/0""","""gq""":67,"""pec""":0,"""pev""":0,"""src""":32,"""srv""":1,"""cn""":2}}
diff --git a/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.HG00102.vcf b/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.HG00102.vcf
index 12deeb9..57789c9 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.HG00102.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.HG00102.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:6230959442cebb4039b27326a5f06c074af0becaec68383b35ddf8a8cd475be3
-size 13954
+oid sha256:2aed774b30100f43106a60083c87007c78223f2ac78b7bddf2572a8e09226f7d
+size 13950
diff --git a/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.NA12878.vcf b/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.NA12878.vcf
index 921574b..9c3cfda 100644
--- a/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.NA12878.vcf
+++ b/varfish-annotator-cli/src/test/resources/input/grch38-chr1/bwa.delly2.NA12878.vcf
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:ec70c7f9d09df8151f2ba129fa35f59e71b6aa306814712ee5916a1a2cae1621
-size 14463
+oid sha256:73f7dd98f2412e7ac55cb0bbf1960cdb25c673a86c63a45569b93e0097c783b5
+size 14459
diff --git a/varfish-annotator-cli/src/test/resources/input/real-world-37/bwa.delly2.Case_1_index-N1-DNA1-WGS1.gts.tsv b/varfish-annotator-cli/src/test/resources/input/real-world-37/bwa.delly2.Case_1_index-N1-DNA1-WGS1.gts.tsv
index 6502f0d..a633332 100644
--- a/varfish-annotator-cli/src/test/resources/input/real-world-37/bwa.delly2.Case_1_index-N1-DNA1-WGS1.gts.tsv
+++ b/varfish-annotator-cli/src/test/resources/input/real-world-37/bwa.delly2.Case_1_index-N1-DNA1-WGS1.gts.tsv
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:47578a2f0e39b19b26112e2997c92cfd05e8d90f52f49587fcc02da80b1bacd7
-size 19624825
+oid sha256:558b873f30c62a92e71a265301957eee5c47297bbe6cac473c25f654d074c4e0
+size 19593217
diff --git a/varfish-annotator-core/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/GtRecordBuilder.java b/varfish-annotator-core/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/GtRecordBuilder.java
index b5c38eb..d7bb933 100644
--- a/varfish-annotator-core/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/GtRecordBuilder.java
+++ b/varfish-annotator-core/src/main/java/com/github/bihealth/varfish_annotator/annotate_svs/GtRecordBuilder.java
@@ -19,7 +19,7 @@ public class GtRecordBuilder {
   public static final String FEATURE_CALLERS_ARRAY = "callers-array";
 
   private final String release;
-  private final String defaultSvMethod;
+  private final String svMethod;
   private final String optOutFeatures;
   private final String caseId;
   private final String setId;
@@ -28,14 +28,14 @@ public class GtRecordBuilder {
 
   public GtRecordBuilder(
       String release,
-      String defaultSvMethod,
+      String svMethod,
       String optOutFeatures,
       String caseId,
       String setId,
       Pedigree pedigree,
       CallerSupport callerSupport) {
     this.release = release;
-    this.defaultSvMethod = defaultSvMethod;
+    this.svMethod = svMethod;
     this.optOutFeatures = optOutFeatures;
     this.caseId = caseId;
     this.setId = setId;
@@ -88,10 +88,6 @@ public GenotypeRecord buildRecord(
     builder.setSetId(setId);
     builder.setSvUuid(variantId.toString());
 
-    String svMethod = ctx.getCommonInfo().getAttributeAsString("SVMETHOD", null);
-    if (svMethod == null) {
-      svMethod = defaultSvMethod == null ? "." : defaultSvMethod;
-    }
     builder.setCaller(svMethod);
     if (!".".equals(svMethod)) {
       builder.setCallers(ImmutableList.of(svMethod));
diff --git a/varfish-annotator-core/src/test/resources/callers-sv/delly2-head.vcf b/varfish-annotator-core/src/test/resources/callers-sv/delly2-head.vcf
index b7d7b24..13adb57 100644
--- a/varfish-annotator-core/src/test/resources/callers-sv/delly2-head.vcf
+++ b/varfish-annotator-core/src/test/resources/callers-sv/delly2-head.vcf
@@ -129,4 +129,4 @@
 ##bcftools_viewVersion=1.15.1+htslib-1.15.1
 ##bcftools_viewCommand=view -O z -o work/bwa.delly2.SAMPLE-N1-DNA1-WGS1/out/bwa.delly2.SAMPLE-N1-DNA1-WGS1.vcf.gz /data/gpfs-1/users/holtgrem_c/scratch/tmp/hpc-cpu-164/20220829/tmp.jo3WnHhrQp/cwd/1.bcf; Date=Mon Aug 29 16:04:36 2022
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMPLE
-1	586412	DEL00000004	C	<DEL>	92	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv1.1.3;END=586439;PE=0;MAPQ=0;CT=3to5;CIPOS=-20,20;CIEND=-20,20;SRMAPQ=23;INSLEN=0;HOMLEN=20;SR=4;SRQ=1;CONSENSUS=CTCAGGGTGTTCGGGATAAAGAAGACTCAGGAAGACAAGTATGAAGCATAATCTGTGACATTATTGATATCTTCCTGAAGAACATAATTCCTGCCTACCATCAACAAGCATCAATACTTTCTACCAGCTATTCTCAACCCTCATCATCGGAAGAGACAGACACTGACTGTGTCAAA;CE=1.96018;AC=3;AN=6	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-5.90527,0,-14.2974:59:PASS:203:373:203:2:0:0:7:4	0/1:-2.23535,0,-11.3961:22:PASS:188:321:130:2:0:0:6:2	0/1:-1.0313,0,-19.791:10:LowQual:327:515:247:2:0:0:11:2
+1	586412	DEL00000004	C	<DEL>	92	PASS	PRECISE;SVTYPE=DEL;SVMETHOD=DELLY2_SVv1.1.3;END=586439;PE=0;MAPQ=0;CT=3to5;CIPOS=-20,20;CIEND=-20,20;SRMAPQ=23;INSLEN=0;HOMLEN=20;SR=4;SRQ=1;CONSENSUS=CTCAGGGTGTTCGGGATAAAGAAGACTCAGGAAGACAAGTATGAAGCATAATCTGTGACATTATTGATATCTTCCTGAAGAACATAATTCCTGCCTACCATCAACAAGCATCAATACTTTCTACCAGCTATTCTCAACCCTCATCATCGGAAGAGACAGACACTGACTGTGTCAAA;CE=1.96018;AC=3;AN=6	GT:GL:GQ:FT:RCL:RC:RCR:RDCN:DR:DV:RR:RV	0/1:-5.90527,0,-14.2974:59:PASS:203:373:203:2:0:0:7:4	0/1:-2.23535,0,-11.3961:22:PASS:188:321:130:2:0:0:6:2	0/1:-1.0313,0,-19.791:10:LowQual:327:515:247:2:0:0:11:2