Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

multuple entries for some datatypes #209

Open
wm75 opened this issue Jul 14, 2019 · 3 comments
Open

multuple entries for some datatypes #209

wm75 opened this issue Jul 14, 2019 · 3 comments

Comments

@wm75
Copy link
Member

wm75 commented Jul 14, 2019

As noted by Chris Barnett in https://help.galaxyproject.org/t/duplicate-tools-and-datatypes/1694
EU has several datatypes that are presented for selection multiple times. The one he gathered are:

  • blastcml
  • consensusxml
  • cps
  • deeptools_compute_matrix_archive (multiple duplicates)
  • deeptools_coverage_matrix (multiple duplicates)
  • eden_model
  • idpdb
  • pdb

These datatype duplicates are even more confuisng than tool duplicates because for the user there is no way to find out if they are equivalent or different.

@bgruening suggested that these could stem from times when datatypes were still installed via the toolshed. Not sure where to report this issue, but if it's really toolshed-related, this could be the right place?

@bgruening
Copy link
Member

I fixed the deeptools ones already. Need to double check the others as well.

@bgruening
Copy link
Member

And indeed it was toolshed datatypes, which I removed.

@wm75
Copy link
Member Author

wm75 commented Jul 15, 2019

ok, I went through the list of datatypes and here's a (hopefully) complete list of stuff that's still duplicated (including the one's from Chris' initial list that I could verify):

  • blastxml
  • cml
  • consensusxml
  • cps
  • dbnsfp.tabular
  • featurexml
  • fps
  • hlf
  • idat
  • idpdb
  • idxml
  • inchi
  • maskinfo-asn1
  • maskinfo-asn1-binary
  • mgf
  • mol
  • ms2
  • msp
  • mzid
  • mzml
  • mzq
  • mzxml
  • no_unzip.zip
  • pdb
  • pepxml
  • pepxml.tabular
  • protxml
  • protxml.tsv
  • pssm-asn1
  • qcml
  • sdf
  • sf3
  • smi
  • snpeffdb
  • stockholm
  • tandem
  • trafoxml
  • traml

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants