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+ To run pythODE++
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+ 1) Ensure that pythODE++ is checked out under your /home/user directory. If it isn't, the scripts will not execute
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+ 2) In this same directory, build the program by executing the build script: ./build
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+ 3) Navigate back to your /home/user directory. Create a file called hostfile. The format for the file is as follows:
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+ hostname slots=(Insert number of processes here) max_slots=(Insert number of processes here)
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+ This file tells MPI which nodes to run on, with how many processes on each node. For example
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+ moler slots=12 max_slots=12
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+ would run the scripts on the moler head node with 12 processes.
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+ 4) navigate to the pythODE++/scripts directory. To run a script, execute the run-experiment.sh file, and enter the name
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+ of the script you want to run *without* the .py extension:
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+ ./run-experiment.sh brusselator-experiment
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+
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+ For more information on the format of the experiment scripts, see the tutorial under the scripts directory.
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