Bump matplotlib from 3.8.0 to 3.8.1 #44
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Test motif search algorithms | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test brute force motif not present | |
| shell: bash | |
| run: python3 run_search.py -f test_data/gb1.pdb -m SER-HIS-ASP -d 4.0-3.2-5.9 | |
| - name: Test brute force motif present | |
| shell: bash | |
| run: python3 run_search.py -f test_data/gb1.pdb -m VAL-LEU-LEU -d 8.6-6.8-4.2 | |
| - name: Test triangle motif not present | |
| shell: bash | |
| run: python3 run_search.py -f test_data/gb1.pdb -m SER-HIS-ASP -d 4.0-3.2-5.9 -a | |
| - name: Test triangle motif present | |
| shell: bash | |
| run: python3 run_search.py -f test_data/gb1.pdb -m VAL-LEU-LEU -d 8.6-6.8-4.2 -a | |