diff --git a/django-stubs/db/models/sql/query.pyi b/django-stubs/db/models/sql/query.pyi
index 2a4ba6a21..f8d1f67e7 100644
--- a/django-stubs/db/models/sql/query.pyi
+++ b/django-stubs/db/models/sql/query.pyi
@@ -123,15 +123,12 @@ class Query(BaseExpression):
         can_reuse: set[str] | None = ...,
         allow_joins: bool = ...,
         split_subq: bool = ...,
-        reuse_with_filtered_relation: bool = ...,
         check_filterable: bool = ...,
+        update_join_types: bool = ...,
     ) -> tuple[WhereNode, Iterable[str]]: ...
     def add_filter(self, filter_clause: tuple[str, Any]) -> None: ...
     def add_q(self, q_object: Q) -> None: ...
     def build_where(self, filter_expr: Q | Expression | dict[str, str] | tuple[str, Any]) -> WhereNode: ...
-    def build_filtered_relation_q(
-        self, q_object: Q, reuse: set[str], branch_negated: bool = ..., current_negated: bool = ...
-    ) -> WhereNode: ...
     def add_filtered_relation(self, filtered_relation: FilteredRelation, alias: str) -> None: ...
     def setup_joins(
         self,
@@ -140,7 +137,6 @@ class Query(BaseExpression):
         alias: str,
         can_reuse: set[str] | None = ...,
         allow_many: bool = ...,
-        reuse_with_filtered_relation: bool = ...,
     ) -> JoinInfo: ...
     def trim_joins(
         self, targets: tuple[Field, ...], joins: list[str], path: list[PathInfo]
@@ -201,7 +197,9 @@ class Query(BaseExpression):
     def build_lookup(self, lookups: Sequence[str], lhs: Expression | Query, rhs: Any) -> Lookup: ...
     def try_transform(self, lhs: Expression | Query, name: str) -> Transform: ...
     def join(
-        self, join: BaseTable | Join, reuse: str | None = ..., reuse_with_filtered_relation: bool = ...
+        self,
+        join: BaseTable | Join,
+        reuse: str | None = ...,
     ) -> str: ...
 
 class JoinPromoter:
diff --git a/scripts/stubtest/allowlist_todo_django50.txt b/scripts/stubtest/allowlist_todo_django50.txt
index 22c6f8700..a54577b7b 100644
--- a/scripts/stubtest/allowlist_todo_django50.txt
+++ b/scripts/stubtest/allowlist_todo_django50.txt
@@ -49,12 +49,6 @@ django.db.models.fields.related.ReverseOneToOneDescriptor.get_prefetch_querysets
 django.db.models.fields.related_descriptors.ForwardManyToOneDescriptor.get_prefetch_querysets
 django.db.models.fields.related_descriptors.ReverseOneToOneDescriptor.get_prefetch_querysets
 django.db.models.lookups.Lookup.allowed_default
-django.db.models.sql.Query.build_filtered_relation_q
-django.db.models.sql.Query.join
-django.db.models.sql.Query.setup_joins
-django.db.models.sql.query.Query.build_filtered_relation_q
-django.db.models.sql.query.Query.join
-django.db.models.sql.query.Query.setup_joins
 django.template.autoreload
 
 # Django + Oracle (new errors after 5.0.5 update)