Discussions

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  Converting SARGE to Tskit?

  swamidass asked Nov 2, 2021 in Q&A · Answered

  

  

  

  

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  I made a simple graph of average regional variation per individual for Wikipedia from your data

  clawsoon started Oct 13, 2021 in Show and tell

  

  

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  I mapped a million of them

  clawsoon started Oct 3, 2021 in Show and tell

  

  

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  Are individual and population IDs consistent across treeseq files?

  clawsoon asked Oct 9, 2021 in Q&A · Unanswered

  

  

  

  

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  Fetching all populations where an allele is present

  clawsoon asked Oct 6, 2021 in Q&A · Unanswered

  

  

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  Documentation for msprime 0.7.3

  paruljohri asked Sep 13, 2021 in Q&A · Answered

  

  

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  Saved tsdate runs for SGDP and 1000 Genomes?

  clawsoon asked Apr 14, 2021 in Q&A · Answered

  

  

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  What name should be used for you all?

  clawsoon asked Sep 6, 2021 in Q&A · Answered

  

  

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  Preprint on LiTI: using SLIM, tsdate, and msprime to infer population demography from lineage times.

  swamidass started Aug 16, 2021 in Show and tell

  

  

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  Shortest subtree containing some number of samples from 2 different populations: cross-coalescent

  stsmall asked Jul 28, 2021 in Q&A · Unanswered

  

  

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  parallel calculation on trees in tree sequence

  stsmall asked Jul 28, 2021 in Q&A · Unanswered

  

  

  

  

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  Intent/scope of individuals.parent column

  hyanwong started Jul 21, 2021 in General

  

  

  

  

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  How to get number of edge changes between this tree and the next?

  hyanwong asked Jul 21, 2021 in Q&A · Unanswered

  

  

  

  

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  Which tree is a site in?

  hyanwong asked Jun 30, 2021 in Q&A · Answered

  

  

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  How do I efficiently find the grand MRCA in a tree?

  hyanwong asked Jun 10, 2021 in Q&A · Answered

  

  

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  File format conversion - tidy up and consistify

  benjeffery started Jun 8, 2021 in Ideas

  

  

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  population identity in VCF

  k-lamb asked May 26, 2021 in Q&A · Answered

  

  

  

  

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  Python 0.3.6

  benjeffery started May 14, 2021 in General

  

  

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  Shortest subtree that contains half the nodes of a population

  stsmall asked May 7, 2021 in Q&A · Answered

  

  

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  more efficient TMRCA computation?

  feilchenfeldt started Apr 10, 2021 in Ideas

  

  

  

  

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  Check tree sequences topologically equal (i.e. ignoring node times)

  hyanwong asked Mar 27, 2021 in Q&A · Answered

  

  

  

  

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  Relabel leaf nodes in "canonical" order

  hyanwong asked Apr 1, 2021 in Q&A · Answered

  

  

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  count of ibd segments between all sampled pairs

  hancockzb asked Mar 12, 2021 in Q&A · Answered

  

  

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  Rightmost and leftmost extent of a node in a tree sequence

  hyanwong started Feb 10, 2021 in Show and tell

  

  

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  general_stat()/sample_count_stat() and f(0)=0 requirement

  grahamgower asked Feb 3, 2021 in Q&A · Answered

  

  

  

  

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