Update GitHub Actions to latest major versions

Author: benjeffery

.github/workflows/docs.yml

@@ -20,15 +20,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Cancel Previous Runs
-        uses: styfle/[email protected].0
+        uses: styfle/[email protected].1
         with:
           access_token: ${{ github.token }}
 
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4.2.2
         with:
           submodules: true
 
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5.3.0
         with:
           python-version: "3.11"
           cache: "pip"

.github/workflows/tests.yml

@@ -14,8 +14,8 @@ jobs:
         uses: styfle/[email protected]
         with:
           access_token: ${{ github.token }}
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4.2.2
+      - uses: actions/setup-python@v5.3.0
       - name: install clang-format
         run: |
           pip install clang-format==6.0.1
@@ -38,19 +38,19 @@ jobs:
           access_token: ${{ github.token }}
 
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.2.2
         with:
           submodules: true
 
       - name: Cache conda and dependencies
         id: cache
-        uses: actions/cache@v3
+        uses: actions/cache@v4.2.0
         with:
           path: ${{ env.CONDA }}/envs
           key: ${{ runner.os }}-${{ runner.arch }}-${{ matrix.python}}-conda-v2-${{ hashFiles('requirements/CI-tests-conda/requirements.txt') }}-${{ hashFiles('requirements/CI-tests-pip/requirements.txt') }}
 
       - name: Install Conda
-        uses: conda-incubator/setup-miniconda@v3
+        uses: conda-incubator/setup-miniconda@v3.1.0
         if: steps.cache.outputs.cache-hit != 'true'
         with:
           activate-environment: anaconda-client-env

.github/workflows/wheels.yml

@@ -18,11 +18,11 @@ jobs:
         python: [3.9, "3.10", 3.11, 3.12]
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.2.2
         with:
             submodules: true
       - name: Set up Python ${{ matrix.python }}
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v5.3.0
         with:
           python-version: ${{ matrix.python }}
       - name: Install deps
@@ -51,7 +51,7 @@ jobs:
           delocate-wheel -v dist/msprime-*arm64.whl
           delocate-wheel -v dist/msprime-*x86_64.whl
       - name: Upload Wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v4.4.3
         with:
           name: osx-wheel-${{ matrix.python }}
           path: dist
@@ -60,11 +60,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.2.2
         with:
             submodules: true
       - name: Set up Python 3.9
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v5.3.0
         with:
           python-version: 3.9
       - name: Build sdist
@@ -73,7 +73,7 @@ jobs:
           pip install --upgrade pip build
           python -m build --sdist
       - name: Upload sdist
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v4.4.3
         with:
           name: sdist
           path: dist
@@ -83,7 +83,7 @@ jobs:
           docker run --rm -v `pwd`:/project -w /project quay.io/pypa/manylinux2014_x86_64 bash .github/workflows/docker/buildwheel.sh
 
       - name: Upload Wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v4.4.3
         with:
           name: linux-wheels
           path: dist/wheelhouse
@@ -96,11 +96,11 @@ jobs:
         python: [3.9, "3.10", 3.11, 3.12]
     steps:
       - name: Download wheels
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v4.1.8
         with:
           name: osx-wheel-${{ matrix.python }}
       - name: Set up Python ${{ matrix.python }}
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v5.3.0
         with:
           python-version: ${{ matrix.python }}
       - name: Install wheel and test
@@ -122,11 +122,11 @@ jobs:
         python: [3.9, "3.10", 3.11, 3.12]
     steps:
       - name: Download wheels
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v4.1.8
         with:
           name: linux-wheels
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v5.3.0
         with:
           python-version: ${{ matrix.python }}
       - name: Install wheel and test
@@ -150,16 +150,16 @@ jobs:
       id-token: write
     steps:
       - name: Download all
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v4.1.8
       - name: Move to dist
         run: |
           mkdir dist
           cp */*.{whl,gz} dist/.
       - name: Publish distribution to Test PyPI
         if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
-        uses: pypa/gh-action-pypi-publish@release/v1
+        uses: pypa/gh-action-pypi-publish@v1.12.3
         with:
           repository_url: https://test.pypi.org/legacy/
       - name: Publish distribution to PRODUCTION PyPI
         if: github.event_name == 'release'
-        uses: pypa/gh-action-pypi-publish@release/v1
+        uses: pypa/gh-action-pypi-publish@v1.12.3