A structural variation pipeline for short-read sequencing

Snakemake-based workflow for detecting structural variants in genomic data

Complex structural variant visualization for HiFi sequencing data

Clinical Whole Genome and Exome Sequencing Pipeline

🔍 Post Assembly Variants Finder

PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

Snakemake-based workflow for generating artificial genomes with structural variants

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples

Long read structural variants in rare disease cohort

Genome assembly and variant benchmarks for Chinese Quartet

A snakemake pipeline to call structure variants from ONT data

In this repository I backup the pipelines I write for the project I am involved

The experiments performed in State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?