Preprocessing and reconstruction of diffusion MRI
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Updated
Jul 16, 2024 - HTML
Preprocessing and reconstruction of diffusion MRI
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Red Hat CodeReady Containers (Minishift equivalent for OpenShift 4.2 or newer) - step-by-step demo guides
Azure DevOps CI/CD pipeline, from local Git setup to multi-stage deployment with pre-approvals, ensuring smooth production releases and overall process efficiency.
Website for the Workflows Community of Practice at the Wellcome Genome Campus
Example code for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)
The Pragmatic Programmer for Machine Learning
Automate everything
Official docs site for https://github.com/devlooped/WebSocketPipe
Gene expression experiments using Python and R
This demo provides a minimal template to explore GitLab CICD workflows with Pipeliner (https://github.com/luisico/pipeliner).
Presentation on targets at the New York Open Statistical Programming Meetup
Slides and materials for my talk to the Madison R Users Group
Moving from sequence of scripts to pipeline of functions
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