RAxML Next Generation: faster, easier-to-use and more flexible
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Updated
Aug 25, 2024 - C++
RAxML Next Generation: faster, easier-to-use and more flexible
Efficient phylogenomic software by maximum likelihood
Ultrafast Sample Placement on Existing Trees
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Version 5 of the CAFE phylogenetics software
phylogenetics tools for linux (and other mostly posix compliant) computers
A library for working with phylogenetic and population genetic data.
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
A toolkit for analyzing and visualizing phylogenetic (placement) data
Massively parallel phylogenetic placement of genetic sequences
♥ Fast and Accurate Estimation of Evolutionary Distances
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
A Bayesian Phylo-HMM for B cell receptor sequence analysis
pruner: Implementing the Felsenstein's Tree Pruning algorithm
Sequential Tree Sampler for online phylogenetics
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
Tools for analyzing and comparing SARS-CoV-2 phylogenies
BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
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