Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
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Updated
Jul 14, 2024 - Python
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Digital pathology image viewer with support for human/machine generated annotations and markups.
QuPath - Bioimage analysis & digital pathology
A framework for high-performance medical image processing, neural network inference and visualization
Tools for computational pathology
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Library for Digital Pathology Image Processing
cuCIM - RAPIDS GPU-accelerated image processing library
Interoperable web-based slide microscopy viewer and annotation tool
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Full package for applying deep learning to virtual slides.
Cytomine-Core is the main web server implementing the Cytomine API
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
⚡ Open-source software for deep learning-based digital pathology
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
Stain normalization tools for histological analysis and computational pathology
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'
PAthological QUpath Obsession - QuPath and Python conversations
🔬 Code-free deep segmentation for computational pathology
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