config.yaml

# File paths
- data:
    cap: data/cap/
    gst: data/gst/
    mpro: data/mpro/
    outPathScratch: scratch/

- viz:
    default:
      xtick.color: "323034"
      ytick.color: "323034"
      text.color: "323034"
      lines.markeredgecolor: black
      patch.facecolor: bc80bd
      figure.figsize: 4.8,3
      patch.force_edgecolor: True
      patch.linewidth: 0.8
      scatter.edgecolors: black
      grid.color: b1afb5
      axes.titlesize: 14
      legend.title_fontsize: 12
      xtick.labelsize: 12
      ytick.labelsize: 12
      axes.labelsize: 12
      font.size: 10
      axes.prop_cycle: (cycler('color', ['bc80bd' ,'fb8072', 'b3de69','fdb462','fccde5','8dd3c7','ffed6f','bebada','80b1d3', 'ccebc5', 'd9d9d9']))
      mathtext.fontset: stix
      font.family: STIXGeneral
      lines.linewidth: 2
      legend.frameon: False
      legend.framealpha: 0.8
      legend.fontsize: 10
      legend.edgecolor: "0.9"
      legend.borderpad: 0.2
      legend.columnspacing: 1.0
      legend.labelspacing: 0.2
      text.usetex: False
      axes.titlelocation: right
      axes.formatter.use_mathtext: True
      axes.autolimit_mode: data
      axes.labelpad: 3
      axes.formatter.limits: -4, 4
      axes.labelcolor: black
      axes.edgecolor: black
      axes.linewidth: 0.6
      axes.xmargin: 0.05
      axes.ymargin: 0.05
      axes.spines.right: False
      axes.spines.top: False
      axes.grid: False
      figure.titlesize: 14
      figure.dpi: 300
    # rcParameter values are taken from:
    # http://aeturrell.com/2018/01/31/publication-quality-plots-in-python/

    jupyter:
      xtick.labelsize: 10
      ytick.labelsize: 10
      font.size: 10
      figure.autolayout: False
      figure.figsize: 6,3
      figure.dpi: 300
      axes.titlesize: 11
      axes.labelsize: 10
      lines.linewidth: 1
      lines.markersize: 3
      legend.fontsize: 8
      mathtext.fontset: stix
      font.family: STIXGeneral
      legend.frameon: False

# Nature standard figure width size
# Single column:    89 mm   (3.50 in)
# Double column:    183 mm  (7.20 in)
# Full depth:       247 mm  (9.72 in)
# PNAS standard figure width size
# Small:            87 mm   (3.42 in)
# Medium:           114 mm  (7.20 in)
# Large:            178 mm  (7.00 in)
- colors:
    black: 0,0,0
    orange: 230,159,0
    sky_blue: 86,180,233
    bluish_green: 0,158,115
    yellow: 240,228,66
    blue: 0,114,178
    vermillion: 213,94,0
    reddish_purple: 204,121,167
  # Convert to hex
  # "#{:02x}{:02x}{:02x}".format(0, 128, 64)
  # "#008040"
  #
  # Reference
  # Wong, B., 2011. Points of view: Color blindness.