From 5511b57f12fc909dcc798f4859a570166c824456 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Tommi=20M=C3=A4klin?= <tommi@maklin.fi>
Date: Fri, 7 Jun 2024 12:27:40 +0300
Subject: [PATCH] Fix default format (should be themisto)

---
 src/alignment_writer.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/alignment_writer.cpp b/src/alignment_writer.cpp
index 4192a5e..183341d 100644
--- a/src/alignment_writer.cpp
+++ b/src/alignment_writer.cpp
@@ -58,7 +58,7 @@ void parse_args(int argc, char* argv[], cxxargs::Arguments &args) {
   args.add_short_argument<std::string>('l', "List containing reference names (1 per line, required for packing).");
   args.add_short_argument<bool>('d', "Unpack pseudoalignment.", false);
   args.add_long_argument<size_t>("buffer-size", "Buffer size for buffered packing (default: 100000", (size_t)100000);
-  args.add_long_argument<std::string>("format", "Input file format (one of `themisto` (default), `fulgor`, `bifrost`)", "metagraph");
+  args.add_long_argument<std::string>("format", "Input file format (one of `themisto` (default), `fulgor`, `bifrost`, `metagraph`)", "themisto");
   if (CmdOptionPresent(argv, argv+argc, "-d")) {
       args.set_not_required('r');
       args.set_not_required('l');