diff --git a/src/alignment_writer.cpp b/src/alignment_writer.cpp index 4192a5e..183341d 100644 --- a/src/alignment_writer.cpp +++ b/src/alignment_writer.cpp @@ -58,7 +58,7 @@ void parse_args(int argc, char* argv[], cxxargs::Arguments &args) { args.add_short_argument('l', "List containing reference names (1 per line, required for packing)."); args.add_short_argument('d', "Unpack pseudoalignment.", false); args.add_long_argument("buffer-size", "Buffer size for buffered packing (default: 100000", (size_t)100000); - args.add_long_argument("format", "Input file format (one of `themisto` (default), `fulgor`, `bifrost`)", "metagraph"); + args.add_long_argument("format", "Input file format (one of `themisto` (default), `fulgor`, `bifrost`, `metagraph`)", "themisto"); if (CmdOptionPresent(argv, argv+argc, "-d")) { args.set_not_required('r'); args.set_not_required('l');