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About sciplex3 dataset in Figure 2 #60

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ranzhran opened this issue Aug 28, 2024 · 1 comment
Open

About sciplex3 dataset in Figure 2 #60

ranzhran opened this issue Aug 28, 2024 · 1 comment

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@ranzhran
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Hi, thanks for your nice work!
I am interested in the results from Figure 2, but I couldn't find the sciplex dataset: sci-Plex samples (n = 290,889) of A549, K562, and MCF7 cell lines.

Could you please let me know how to obtain the preprocessed dataset as described in your code?
adata = sc.read('/home/icb/carlo.dedonno/projects/cpa-reproducibility/datasets/sciplex3_new.h5ad')
adata_old = sc.read('/home/icb/carlo.dedonno/projects/cpa-reproducibility/datasets/sciplex3_old_reproduced.h5ad'

Thank you very much!

@miladrvahid
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@Naghipourfar and @ArianAmani Dear Mohsen and Arian, sharing those data would be very helpful for me as well. Thanks a lot!

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@miladrvahid @ranzhran and others