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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "augurpy"
version = "0.1.0" # <<COOKIETEMPLE_FORCE_BUMP>>
description = "A Python adaption of Augur to prioritize cell types in perturbation analysis."
authors = ["Lukas Heumos <[email protected]>"]
license = "MIT"
readme = "README.rst"
homepage = "https://github.com/theislab/augurpy"
repository = "https://github.com/theislab/augurpy"
documentation = "https://augurpy.readthedocs.io"
packages = [
{ include = "augurpy" },
]
classifiers = [
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
]
[tool.poetry.dependencies]
python = "^3.6.1"
click = "^8.0.0"
rich = "^10.3.0"
PyYAML = "^5.4.1"
[tool.poetry.dev-dependencies]
pytest = "^6.2.3"
coverage = {extras = ["toml"], version = "^5.3"}
safety = "^1.9.0"
typeguard = "^2.12.0"
xdoctest = {extras = ["colors"], version = "^0.15.0"}
sphinx = "^4.0.2"
sphinx-autobuild = "^2021.3.14"
pre-commit = "^2.11.1"
flake8 = "^3.8.4"
black = "^20.8b1"
flake8-bandit = "^2.1.2"
flake8-bugbear = "^21.4.3"
flake8-docstrings = "^1.5.0"
flake8-rst-docstrings = "^0.2.3"
pep8-naming = "^0.11.1"
darglint = "^1.5.8"
reorder-python-imports = "^2.5.0"
pre-commit-hooks = "^4.0.1"
sphinx-rtd-theme = "^0.5.0"
sphinx-click = "^3.0.0"
Pygments = "^2.8.1"
types-pkg-resources = "^0.1.2"
types-requests = "^2.25.2"
types-attrs = "^19.1.0"
sphinx-rtd-dark-mode = "^1.2.3"
Jinja2 = "^3.0.1"
mypy = "^0.910"
[tool.poetry.scripts]
augurpy = "augurpy.__main__:main"
[tool.black]
line-length = 120
[tool.mypy]
strict = false
pretty = true
show_column_numbers = true
show_error_codes = true
show_error_context = true
ignore_missing_imports = true
[tool.isort]
multi_line_output=3
include_trailing_comma=true
balanced_wrapping=true
line_length=120
[tool.coverage.paths]
source = ["augurpy", "*/site-packages"]
[tool.coverage.run]
branch = true
source = ["augurpy"]
[tool.coverage.report]
show_missing = true
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"