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@base <http://ddbj.nig.ac.jp/ontologies/nucleotide/> .
@prefix : <> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
:
a owl:Ontology ;
rdfs:label "insdc" ;
rdfs:seeAlso <http://www.insdc.org/> .
#################################################################
# Datatypes
#################################################################
### http://www.w3.org/2001/XMLSchema#date
xsd:date rdf:type rdfs:Datatype .
#################################################################
# Object Properties
#################################################################
### http://insdc.org/owl/accession
:accession rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:label "accession" .
### http://insdc.org/owl/comment
:comment rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:label "comment" .
### http://insdc.org/owl/contig
:contig rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/date
:date rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/dblink
:dblink rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/definition
:definition rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/division
:division rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/feature
:feature rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:range :Feature .
### http://insdc.org/owl/isMandatoryQualifierOf
:isMandatoryQualifierOf rdf:type owl:ObjectProperty .
### http://insdc.org/owl/isOptionalQualifierOf
:isOptionalQualifierOf rdf:type owl:ObjectProperty .
### http://insdc.org/owl/keyword
:keyword rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:range :Keyword .
### http://insdc.org/owl/lineage
:lineage rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/locus
:locus rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/molecule
:molecule rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/project
:project rdf:type owl:ObjectProperty ;
rdfs:domain :Entry .
### http://insdc.org/owl/reference
:reference rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:range :Reference .
### http://insdc.org/owl/sequence
:sequence rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:range :Sequence ;
rdfs:label "sequence" .
### http://insdc.org/owl/stranded
:stranded rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:label "stranded" .
### http://insdc.org/owl/topology
:topology rdf:type owl:ObjectProperty ;
rdfs:domain :Sequence .
### http://insdc.org/owl/version
:version rdf:type owl:ObjectProperty ;
rdfs:domain :Entry ;
rdfs:label "version" .
#################################################################
# Data properties
#################################################################
### http://insdc.org/owl/EC_number
:EC_number rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Coding_Sequence
:Exon
:Mature_Peptide
)
] ;
rdfs:range rdfs:Literal ;
rdfs:comment "Enzyme Commission number for enzyme product of sequence" ;
rdfs:label "EC_number" .
### http://insdc.org/owl/PCR_conditions
:PCR_conditions rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Primer_Binding_Site ;
rdfs:range rdfs:Literal ;
rdfs:comment "description of reaction conditions and components for PCR" ;
rdfs:label "PCR_conditions" .
### http://insdc.org/owl/PCR_primers
:PCR_primers rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:comment "PCR primers that were used to amplify the sequence. A single /PCR_primers qualifier should contain all the primers used for a single PCR reaction. If multiple forward or reverse primers are present in a single PCR reaction, multiple sets of fwd_name/fwd_seq or rev_name/rev_seq values will be present." ;
rdfs:label "PCR_primers" .
### http://insdc.org/owl/allele
:allele rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Attenuator
:CAAT_Signal
:Coding_Sequence
:Constant_Region
:Displacement_Loop
:Diversity_Segment
:Enhancer
:Exon
:Five_Prime_UTR
:GC_Signal
:Intervening_DNA
:Intron
:Joining_Segment
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Minus_10_Signal
:Minus_35_Signal
:Miscellaneous_Binding_Site
:Miscellaneous_Difference
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Recombination_Site
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Modified_Base
:N_Region
:Non_Coding_RNA
:Operon
:Origin_Of_Transfer
:PolyA_Signal
:PolyA_Site
:Precursor_RNA
:Primary_Transcript
:Primer_Binding_Site
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Replication_Origin
:Ribosomal_RNA
:Ribosome_Binding_Site
:Sequence_Tagged_Site
:Signal_Peptide
:Stem_Loop
:Switch_Region
:TATA_Signal
:Terminator
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
:Unsure
:Variable_Region
:Variable_Segment
:Variation
)
] ;
rdfs:range rdfs:Literal ;
rdfs:comment "name of the allele for the given gene" ;
rdfs:label "allele" .
### http://insdc.org/owl/altitude
:altitude rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "geographical altitude of the location from which the sample was collected" ;
rdfs:label "altitude" .
### http://insdc.org/owl/anticodon
:anticodon rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Transfer_RNA ;
rdfs:comment "location of the anticodon of tRNA and the amino acid for which it codes" ;
rdfs:label "anticodon" .
### http://insdc.org/owl/artificial_location
:artificial_location rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Coding_Sequence
:Messenger_RNA
)
] ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "heterogeneous population sequenced"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "low-quality sequence region"^^xsd:string ;
rdf:rest rdf:nil
]
]
] ;
rdfs:comment "indicates that location of the CDS or mRNA is modified to adjust for the presence of a frameshift or internal stop codon and not because of biological processing between the regions." ;
rdfs:label "artificial_location" .
### http://insdc.org/owl/bio_material
:bio_material rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:comment "identifier for the biological material from which the nucleic acid sequenced was obtained, with optional institution code and collection code for the place where it is currently stored." ;
rdfs:label "bio_material" .
### http://insdc.org/owl/bound_moiety
:bound_moiety rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Enhancer
:Miscellaneous_Binding_Site
:Origin_Of_Transfer
:Promoter
:Protein_Binding_Site
)
] ;
rdfs:range rdfs:Literal ;
rdfs:comment "name of the molecule/complex that may bind to the given feature" ;
rdfs:label "bound_moiety" .
### http://insdc.org/owl/cell_line
:cell_line rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "cell line from which the sequence was obtained" ;
rdfs:label "cell_line" .
### http://insdc.org/owl/cell_type
:cell_type rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "cell type from which the sequence was obtained" ;
rdfs:label "cell_type" .
### http://insdc.org/owl/chromosome
:chromosome rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
owl:propertyDisjointWith :plasmid ;
rdfs:comment "chromosome (e.g. Chromosome number) from which the sequence was obtained" ;
rdfs:label "chromosome" .
### http://insdc.org/owl/citation
:citation rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Attenuator
:CAAT_Signal
:Centromere
:Coding_Sequence
:Constant_Region
:Displacement_Loop
:Diversity_Segment
:Enhancer
:Exon
:Five_Prime_UTR
:GC_Signal
:Intervening_DNA
:Intron
:Joining_Segment
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Minus_10_Signal
:Minus_35_Signal
:Miscellaneous_Binding_Site
:Miscellaneous_Difference
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Recombination_Site
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Modified_Base
:N_Region
:Non_Coding_RNA
:Operon
:Origin_Of_Transfer
:PolyA_Signal
:PolyA_Site
:Precursor_RNA
:Primary_Transcript
:Primer_Binding_Site
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Replication_Origin
:Ribosomal_RNA
:Ribosome_Binding_Site
:Sequence_Tagged_Site
:Signal_Peptide
:Source
:Stem_Loop
:Switch_Region
:TATA_Signal
:Telomere
:Terminator
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
:Unsure
:Variable_Region
:Variable_Segment
:Variation
)
] ;
rdfs:comment "reference to a citation listed in the entry reference field" ;
rdfs:label "citation" .
### http://insdc.org/owl/clone
:clone rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Miscellaneous_Difference
:Source
)
] ;
rdfs:range rdfs:Literal ;
rdfs:comment "clone from which the sequence was obtained" ;
rdfs:label "clone" .
### http://insdc.org/owl/clone_lib
:clone_lib rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "clone library from which the sequence was obtained" ;
rdfs:label "clone_lib" .
### http://insdc.org/owl/codon_start
:codon_start rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Coding_Sequence ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first 1 ;
rdf:rest [ rdf:type rdf:List ;
rdf:first 2 ;
rdf:rest [ rdf:type rdf:List ;
rdf:first 3 ;
rdf:rest rdf:nil
]
]
]
] ;
rdfs:comment "indicates the offset at which the first complete codon of a coding feature can be found, relative to the first base of that" ;
rdfs:label "codon_start" .
### http://insdc.org/owl/collected_by
:collected_by rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "name of persons or institute who collected the specimen" ;
rdfs:label "collected_by" .
### http://insdc.org/owl/collection_date
:collection_date rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:comment "date that the specimen was collected" ;
rdfs:label "collection_date" .
### http://insdc.org/owl/compare
:compare rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Miscellaneous_Difference
:Unsure
:Variation
)
] ;
rdfs:comment "Reference details of an existing public INSD entry to which a comparison is made" ;
rdfs:label "compare" .
### http://insdc.org/owl/country
:country rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:comment "locality of isolation of the sequenced organism indicated in terms of political names for nations, oceans or seas, followed by regions and localities" ;
rdfs:label "country" .
### http://insdc.org/owl/cultivar
:cultivar rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "cultivar (cultivated variety) of plant from which sequence was obtained." ;
rdfs:label "cultivar" .
### http://insdc.org/owl/culture_collection
:culture_collection rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:comment "institution code and identifier for the culture from which the nucleic acid sequenced was obtained, with optional collection code." ;
rdfs:label "culture_collection" .
### http://insdc.org/owl/db_xref
:db_xref rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Attenuator
:CAAT_Signal
:Centromere
:Coding_Sequence
:Constant_Region
:Displacement_Loop
:Diversity_Segment
:Enhancer
:Exon
:Five_Prime_UTR
:GC_Signal
:Intervening_DNA
:Intron
:Joining_Segment
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Minus_10_Signal
:Minus_35_Signal
:Miscellaneous_Binding_Site
:Miscellaneous_Difference
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Recombination_Site
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Modified_Base
:N_Region
:Non_Coding_RNA
:Operon
:Origin_Of_Transfer
:PolyA_Signal
:PolyA_Site
:Precursor_RNA
:Primary_Transcript
:Primer_Binding_Site
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Replication_Origin
:Ribosomal_RNA
:Ribosome_Binding_Site
:Sequence_Tagged_Site
:Signal_Peptide
:Source
:Stem_Loop
:Switch_Region
:TATA_Signal
:Telomere
:Terminator
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
:Unsure
:Variable_Region
:Variable_Segment
:Variation
)
] ;
rdfs:comment "database cross-reference: pointer to related information in another database." ;
rdfs:label "db_xref" .
### http://insdc.org/owl/dev_stage
:dev_stage rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "if the sequence was obtained from an organism in a specific developmental stage, it is specified with this qualifier" ;
rdfs:label "dev_stage" .
### http://insdc.org/owl/direction
:direction rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Origin_Of_Transfer
:Replication_Origin
)
] ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "both"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "left"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "right"^^xsd:string ;
rdf:rest rdf:nil
]
]
]
] ;
rdfs:comment "direction of DNA replication" ;
rdfs:label "direction" .
### http://insdc.org/owl/ecotype
:ecotype rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:comment "a population within a given species displaying genetically based, phenotypic traits that reflect adaptation to a local habitat." ;
rdfs:label "ecotype" .
### http://insdc.org/owl/environmental_sample
:environmental_sample rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range xsd:boolean ;
owl:propertyDisjointWith :strain ;
rdfs:comment "identifies sequences derived by direct molecular isolation from a bulk environmental DNA sample (by PCR with or without subsequent cloning of the product, DGGE, or other anonymous methods) with no reliable identification of the source organism. Environmental samples include clinical samples, gut contents, and other sequences from anonymous organisms that may be associated with a particular host. They do not include endosymbionts that can be reliably recovered from a particular host, organisms from a readily identifiable but uncultured field sample (e.g., many cyanobacteria), or phytoplasmas that can be reliably recovered from diseased plants (even though these cannot be grown in axenic culture)." ;
rdfs:label "environmental_sample" .
### http://insdc.org/owl/estimated_length
:estimated_length rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Assembly_Gap
:Gap
)
] ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:int
[ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "unknown"^^xsd:string ;
rdf:rest rdf:nil
]
]
)
] ;
rdfs:comment "estimated length of the gap in the sequence" ;
rdfs:label "estimated_length" .
### http://insdc.org/owl/exception
:exception rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Coding_Sequence ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "RNA editing"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "annotated by transcript or proteomic data"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "rearrangement required for product"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "reasons given in citation"^^xsd:string ;
rdf:rest rdf:nil
]
]
]
]
] ;
rdfs:comment "indicates that the coding region cannot be translated using standard biological rules" ;
rdfs:label "exception" .
### http://insdc.org/owl/experiment
:experiment rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Attenuator
:CAAT_Signal
:Centromere
:Coding_Sequence
:Constant_Region
:Displacement_Loop
:Diversity_Segment
:Enhancer
:Exon
:Five_Prime_UTR
:GC_Signal
:Gap
:Intervening_DNA
:Intron
:Joining_Segment
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Minus_10_Signal
:Minus_35_Signal
:Miscellaneous_Binding_Site
:Miscellaneous_Difference
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Recombination_Site
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Modified_Base
:N_Region
:Non_Coding_RNA
:Operon
:Origin_Of_Transfer
:PolyA_Signal
:PolyA_Site
:Precursor_RNA
:Primary_Transcript
:Primer_Binding_Site
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Replication_Origin
:Ribosomal_RNA
:Ribosome_Binding_Site
:Sequence_Tagged_Site
:Signal_Peptide
:Stem_Loop
:Switch_Region
:TATA_Signal
:Telomere
:Terminator
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
:Unsure
:Variable_Region
:Variable_Segment
:Variation
)
] ;
rdfs:comment "a brief description of the nature of the experimental evidence that supports the feature identification or assignment." ;
rdfs:label "experiment" .
### http://insdc.org/owl/ff_definition
:ff_definition rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier .
### http://insdc.org/owl/focus
:focus rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range xsd:boolean ;
rdfs:comment "identifies the source feature of primary biological interest for records that have multiple source features originating from different organisms and that are not transgenic." ;
rdfs:label "focus" .
### http://insdc.org/owl/frequency
:frequency rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Modified_Base
:Source
:Variation
)
] ;
rdfs:comment "frequency of the occurrence of a feature" ;
rdfs:label "frequency" .
### http://insdc.org/owl/function
:function rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Coding_Sequence
:Exon
:Five_Prime_UTR
:Intervening_DNA
:Intron
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Miscellaneous_Binding_Site
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Non_Coding_RNA
:Operon
:Precursor_RNA
:Primary_Transcript
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Ribosomal_RNA
:Signal_Peptide
:Stem_Loop
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
)
] ;
rdfs:range rdfs:Literal ;
rdfs:comment "function attributed to a sequence" ;
rdfs:label "function" .
### http://insdc.org/owl/gap_type
:gap_type rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Assembly_Gap ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "between scaffolds"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "centromere"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "heterochromatin"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "repeat between scaffolds"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "repeat within scaffold"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "short arm"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "telomere"^^xsd:string ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "within scaffold"^^xsd:string ;
rdf:rest rdf:nil
]
]
]
]
]
]
]
]
] ;
rdfs:comment "type of gap connecting components in records of a genome assembly, or the type of biological gap in a record that is part of a genome assembly;" ;
rdfs:label "gap_type" ;
rdfs:seeAlso <http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml> .
### http://insdc.org/owl/gene
:gene rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Attenuator
:CAAT_Signal
:Coding_Sequence
:Constant_Region
:Displacement_Loop
:Diversity_Segment
:Enhancer
:Exon
:Five_Prime_UTR
:GC_Signal
:Intervening_DNA
:Intron
:Joining_Segment
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Minus_10_Signal
:Minus_35_Signal
:Miscellaneous_Binding_Site
:Miscellaneous_Difference
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Recombination_Site
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Modified_Base
:N_Region
:Non_Coding_RNA
:Operon
:Origin_Of_Transfer
:PolyA_Signal
:PolyA_Site
:Precursor_RNA
:Primary_Transcript
:Primer_Binding_Site
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Replication_Origin
:Ribosomal_RNA
:Ribosome_Binding_Site
:Sequence_Tagged_Site
:Signal_Peptide
:Stem_Loop
:Switch_Region
:TATA_Signal
:Terminator
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
:Unsure
:Variable_Region
:Variable_Segment
:Variation
)
] ;
rdfs:comment "symbol of the gene corresponding to a sequence region" ;
rdfs:label "gene" .
### http://insdc.org/owl/gene_synonym
:gene_synonym rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :Attenuator
:CAAT_Signal
:Coding_Sequence
:Constant_Region
:Displacement_Loop
:Diversity_Segment
:Enhancer
:Exon
:Five_Prime_UTR
:GC_Signal
:Intervening_DNA
:Intron
:Joining_Segment
:Long_Terminal_Repeat
:Mature_Peptide
:Messenger_RNA
:Minus_10_Signal
:Minus_35_Signal
:Miscellaneous_Binding_Site
:Miscellaneous_Difference
:Miscellaneous_Feature
:Miscellaneous_RNA
:Miscellaneous_Recombination_Site
:Miscellaneous_Signal
:Miscellaneous_Structure
:Mobile_Element
:Modified_Base
:N_Region
:Non_Coding_RNA
:Origin_Of_Transfer
:PolyA_Signal
:PolyA_Site
:Precursor_RNA
:Primary_Transcript
:Primer_Binding_Site
:Promoter
:Protein_Binding_Site
:Repeat_Region
:Replication_Origin
:Ribosomal_RNA
:Ribosome_Binding_Site
:Sequence_Tagged_Site
:Signal_Peptide
:Stem_Loop
:Switch_Region
:TATA_Signal
:Terminator
:Three_Prime_UTR
:Transfer_Messenger_RNA
:Transfer_RNA
:Transit_Peptide
:Unsure
:Variable_Region
:Variable_Segment
:Variation
)
] ;
rdfs:range rdfs:Literal ;
rdfs:comment "synonymous, replaced, obsolete or former gene symbol" ;
rdfs:label "gene_synonym" .
### http://insdc.org/owl/germline
:germline rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range xsd:boolean ;
owl:propertyDisjointWith :rearranged ;
rdfs:comment "the sequence presented in the entry has not undergone somatic rearrangement as part of an adaptive immune response; it is the unrearranged sequence that was inherited from the parental germline" ;
rdfs:label "germline" .
### http://insdc.org/owl/haplogroup
:haplogroup rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "name for a group of similar haplotypes that share some sequence variation. Haplogroups are often used to track migration of population groups." ;
rdfs:label "haplogroup" .
### http://insdc.org/owl/haplotype
:haplotype rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "name for a combination of alleles that are linked together on the same physical chromosome. In the absence of recombination, each haplotype is inherited as a unit, and may be used to track gene flow in populations." ;
rdfs:label "haplotype" .
### http://insdc.org/owl/host
:host rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;
rdfs:range rdfs:Literal ;
rdfs:comment "natural (as opposed to laboratory) host to the organism from which sequenced molecule was obtained" ;
rdfs:label "host" .
### http://insdc.org/owl/identified_by
:identified_by rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :qualifier ;
rdfs:domain :Source ;