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vir_protein.gpff
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LOCUS NP_040580 181 aa linear PHG 11-MAR-2011
DEFINITION DNA packaging protein [Escherichia virus Lambda].
ACCESSION NP_040580
VERSION NP_040580.1
DBLINK BioProject: PRJNA14204
DBSOURCE REFSEQ: accession NC_001416.1
KEYWORDS RefSeq.
SOURCE Escherichia virus Lambda
ORGANISM Escherichia virus Lambda
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Lambdavirus.
REFERENCE 1 (sites)
AUTHORS Chen,C.Y. and Richardson,J.P.
TITLE Sequence elements essential for rho-dependent transcription
termination at lambda tR1
JOURNAL J. Biol. Chem. 262 (23), 11292-11299 (1987)
PUBMED 3038914
REFERENCE 2 (sites)
AUTHORS Peltz,S.W., Brown,A.L., Hasan,N., Podhajska,A.J. and Szybalski,W.
TITLE Thermosensitivity of a DNA recognition site: activity of a
truncated nutL antiterminator of coliphage lambda
JOURNAL Science 228 (4695), 91-93 (1985)
PUBMED 3156406
REFERENCE 3 (sites)
AUTHORS Coleclough,C. and Erlitz,F.L.
TITLE Use of primer-restriction-end adapters in a novel cDNA cloning
strategy
JOURNAL Gene 34 (2-3), 305-314 (1985)
PUBMED 2408965
REFERENCE 4 (sites)
AUTHORS Place,N., Fien,K., Mahoney,M.E., Wulff,D.L., Ho,Y.S., Debouck,C.,
Rosenberg,M., Shih,M.C. and Gussin,G.N.
TITLE Mutations that alter the DNA binding site for the bacteriophage
lambda cII protein and affect the translation efficiency of the cII
gene
JOURNAL J. Mol. Biol. 180 (4), 865-880 (1984)
PUBMED 6241264
REFERENCE 5 (sites)
AUTHORS Frackman,S., Siegele,D.A. and Feiss,M.
TITLE A functional domain of bacteriophage lambda terminase for prohead
binding
JOURNAL J. Mol. Biol. 180 (2), 283-300 (1984)
PUBMED 6096564
REFERENCE 6 (sites)
AUTHORS Craig,N.L. and Nash,H.A.
TITLE E. coli integration host factor binds to specific sites in DNA
JOURNAL Cell 39 (3 PT 2), 707-716 (1984)
PUBMED 6096022
REFERENCE 7 (sites)
AUTHORS Edlind,T.D., Cooley,T.E., Richards,S.H. and Ihler,G.M.
TITLE Long range base-pairing in the leftward transcription unit of
bacteriophage lambda. Characterization by electron microscopy and
computer-aided sequence analysis
JOURNAL J. Mol. Biol. 179 (3), 351-365 (1984)
PUBMED 6096550
REFERENCE 8 (sites)
AUTHORS Warren,F. and Das,A.
TITLE Formation of termination-resistant transcription complex at phage
lambda nut locus: effects of altered translation and a ribosomal
mutation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (12), 3612-3616 (1984)
PUBMED 6233610
REFERENCE 9 (sites)
AUTHORS Wulff,D.L., Mahoney,M., Shatzman,A. and Rosenberg,M.
TITLE Mutational analysis of a regulatory region in bacteriophage lambda
that has overlapping signals for the initiation of transcription
and translation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 555-559 (1984)
PUBMED 6229793
REFERENCE 10 (sites)
AUTHORS Hohn,B.
TITLE DNA sequences necessary for packaging of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (24), 7456-7460 (1983)
PUBMED 6324174
REFERENCE 11 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F. and
Blattner,F.R.
TITLE Appendix I: A molecular map of coliphage lambda
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 469-517;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 12 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F.,
Coulson,A.R., Hong,G.F., Hill,D.F., Petersen,G.B. and Blattner,F.R.
TITLE Appendix II: Complete annotated lambda sequence
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 519-674;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 13 (residues 1 to 181)
AUTHORS Sanger,F., Coulson,A.R., Hong,G.F., Hill,D.F. and Petersen,G.B.
TITLE Nucleotide sequence of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 162 (4), 729-773 (1982)
PUBMED 6221115
REFERENCE 14 (sites)
AUTHORS Adhya,S. and Gottesman,M.
TITLE Control of transcription termination
JOURNAL Annu. Rev. Biochem. 47, 967-996 (1978)
PUBMED 354508
REFERENCE 15 (sites)
AUTHORS Weigel,P.H., Englund,P.T., Murray,K. and Old,R.W.
TITLE The 3'-terminal nucleotide sequences of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 70 (4), 1151-1155 (1973)
PUBMED 4515613
REFERENCE 16 (residues 1 to 181)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AAA96533.
[36] r-strand.
[72] fragments.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,R.A.
(Eds.);Lambda II: 4] review; complete genome.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] review; complete genome with annotation.
[2] both strands.
[4] sites; fragments at the 3'-terminus.
[24] comp strand.
[30] fragments.
[22] sites; transcription termination sites.
[84] sites; cohesive ends.
[91] sites; Pre-promoter mutations.
[87] sites; attP recombination site.
[88] sites; major leftward transcription unit.
[89] sites; prohead binding.
[90] sites; cII binding site mutations.
[92] sites; nutR mutations.
[93] sites; light chain oligonucleotides.
[94] sites; nutL antiterminator.
[95] sites; rho utilization sites A and B.
Contributed on tape by F.Sanger via D.L.Daniels. Most of references
[3] through [85] are either annotated by [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4] and
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5], which are
the immediate sources for the annotation below, or they are cited
in Table 3 of [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4]. Only references [27] through
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] are represented
in the features table herein.
This is the best representation to date of the wild-type lambda
l-strand, though much of the sequence was determined for the
cI857s7 strain and changed to wild-type [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. All
reported
variations leading to the strains cI857s7, imm21, imm434, lac5,
Nin5 and b2 are included in the annotation. The first twelve bases
are the sticky ends. A significant fraction of the known mutations
affecting replication and transcription have been annotated below;
a large number of point mutations, deletions and substitutions have
not. For a complete account of lambda mutations in relation to the
sequence, see [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4].
Each coding sequence belongs to a reading frame (orf) whose number,
given in parentheses, should indicate the number of amino acids
coded. The starting points for translation are known with varying
degrees of certainty; for example, the start site for the N
protein, given here as 35438, may turn out to be downstream (on the
complementary strand) at 35360. When direct empirical evidence such
as mutation or amino acid sequence is lacking, the start point is
said to be putative. For a summary of the evidence bearing upon the
coding sequences, see [72],[(in) Hendrix,R.W., Roberts,J.W., Stahl,
F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. Intergenic spaces in
lambda are
typically short and overlapping: the multiple reading frames (mult)
range between a span of 1 and a span of 103. In most cases, a start
codon precedes a termination codon, exceptions being the m-l
boundary (13429) and the 314-194 boundary (21973) which show the
E.coli trp operon pattern of 'translational coupling' (see
<ecotrp>).
Transcription in the central region, bases 22686 to 37940, is
leftward off the l-strand. In our annotation, this is indicated by
the letter 'c' and the descriptive term 'comp strand'. Signals and
recognition sites in this region, without judgement made about
their polarity, are treated accordingly, hence their span should be
read toward the left rather than toward the right. Furthermore some
leftward transcription is located outside the central region, and
that is also indicated by 'c' and 'comp strand'. In general, the
estimates for the extent or span of signals (e.g. operators),
binding sites (e.g. Nutr, int-binding sites, etc.) and of the
attachment site (att) vary in the literature. This annotation
follows [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,
R.A. (Eds.);Lambda II: 4]. No attempt is made to annotate promoters
as signals
because of the indefiniteness of their span, however known promoter
mutants are given. The cII protein is known to bind in the -35
regions of p-i (29091) and pre(38369). Transcript termination sites
must be understood to be conditional on the N and Q proteins and
less than 100% efficient. There remain terminators to be found and
some of those annotated may have significance only in vitro.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..181
/organism="Escherichia virus Lambda"
/host="Escherichia coli"
/db_xref="taxon:10710"
Protein 1..181
/product="DNA packaging protein"
/calculated_mol_wt=20310
CDS 1..181
/gene="nu1"
/locus_tag="lambdap01"
/coded_by="NC_001416.1:191..736"
/transl_table=11
/db_xref="GeneID:2703523"
ORIGIN
1 mevnkkqlad ifgasirtiq nwqeqgmpvl rgggkgnevl ydsaavikwy aerdaeiene
61 klrreveelr qaseadlqpg tieyerhrlt raqadaqelk nardsaevve tafctfvlsr
121 iageiasild glplsvqrrf pelenrhvdf lkrdiikamn kaaaldelip gllseyieqs
181 g
//
LOCUS NP_040581 641 aa linear PHG 11-MAR-2011
DEFINITION DNA packaging protein [Escherichia virus Lambda].
ACCESSION NP_040581
VERSION NP_040581.1
DBLINK BioProject: PRJNA14204
DBSOURCE REFSEQ: accession NC_001416.1
KEYWORDS RefSeq.
SOURCE Escherichia virus Lambda
ORGANISM Escherichia virus Lambda
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Lambdavirus.
REFERENCE 1 (sites)
AUTHORS Chen,C.Y. and Richardson,J.P.
TITLE Sequence elements essential for rho-dependent transcription
termination at lambda tR1
JOURNAL J. Biol. Chem. 262 (23), 11292-11299 (1987)
PUBMED 3038914
REFERENCE 2 (sites)
AUTHORS Peltz,S.W., Brown,A.L., Hasan,N., Podhajska,A.J. and Szybalski,W.
TITLE Thermosensitivity of a DNA recognition site: activity of a
truncated nutL antiterminator of coliphage lambda
JOURNAL Science 228 (4695), 91-93 (1985)
PUBMED 3156406
REFERENCE 3 (sites)
AUTHORS Coleclough,C. and Erlitz,F.L.
TITLE Use of primer-restriction-end adapters in a novel cDNA cloning
strategy
JOURNAL Gene 34 (2-3), 305-314 (1985)
PUBMED 2408965
REFERENCE 4 (sites)
AUTHORS Place,N., Fien,K., Mahoney,M.E., Wulff,D.L., Ho,Y.S., Debouck,C.,
Rosenberg,M., Shih,M.C. and Gussin,G.N.
TITLE Mutations that alter the DNA binding site for the bacteriophage
lambda cII protein and affect the translation efficiency of the cII
gene
JOURNAL J. Mol. Biol. 180 (4), 865-880 (1984)
PUBMED 6241264
REFERENCE 5 (sites)
AUTHORS Frackman,S., Siegele,D.A. and Feiss,M.
TITLE A functional domain of bacteriophage lambda terminase for prohead
binding
JOURNAL J. Mol. Biol. 180 (2), 283-300 (1984)
PUBMED 6096564
REFERENCE 6 (sites)
AUTHORS Craig,N.L. and Nash,H.A.
TITLE E. coli integration host factor binds to specific sites in DNA
JOURNAL Cell 39 (3 PT 2), 707-716 (1984)
PUBMED 6096022
REFERENCE 7 (sites)
AUTHORS Edlind,T.D., Cooley,T.E., Richards,S.H. and Ihler,G.M.
TITLE Long range base-pairing in the leftward transcription unit of
bacteriophage lambda. Characterization by electron microscopy and
computer-aided sequence analysis
JOURNAL J. Mol. Biol. 179 (3), 351-365 (1984)
PUBMED 6096550
REFERENCE 8 (sites)
AUTHORS Warren,F. and Das,A.
TITLE Formation of termination-resistant transcription complex at phage
lambda nut locus: effects of altered translation and a ribosomal
mutation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (12), 3612-3616 (1984)
PUBMED 6233610
REFERENCE 9 (sites)
AUTHORS Wulff,D.L., Mahoney,M., Shatzman,A. and Rosenberg,M.
TITLE Mutational analysis of a regulatory region in bacteriophage lambda
that has overlapping signals for the initiation of transcription
and translation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 555-559 (1984)
PUBMED 6229793
REFERENCE 10 (sites)
AUTHORS Hohn,B.
TITLE DNA sequences necessary for packaging of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (24), 7456-7460 (1983)
PUBMED 6324174
REFERENCE 11 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F. and
Blattner,F.R.
TITLE Appendix I: A molecular map of coliphage lambda
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 469-517;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 12 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F.,
Coulson,A.R., Hong,G.F., Hill,D.F., Petersen,G.B. and Blattner,F.R.
TITLE Appendix II: Complete annotated lambda sequence
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 519-674;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 13 (residues 1 to 641)
AUTHORS Sanger,F., Coulson,A.R., Hong,G.F., Hill,D.F. and Petersen,G.B.
TITLE Nucleotide sequence of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 162 (4), 729-773 (1982)
PUBMED 6221115
REFERENCE 14 (sites)
AUTHORS Adhya,S. and Gottesman,M.
TITLE Control of transcription termination
JOURNAL Annu. Rev. Biochem. 47, 967-996 (1978)
PUBMED 354508
REFERENCE 15 (sites)
AUTHORS Weigel,P.H., Englund,P.T., Murray,K. and Old,R.W.
TITLE The 3'-terminal nucleotide sequences of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 70 (4), 1151-1155 (1973)
PUBMED 4515613
REFERENCE 16 (residues 1 to 641)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AAA96534.
[36] r-strand.
[72] fragments.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,R.A.
(Eds.);Lambda II: 4] review; complete genome.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] review; complete genome with annotation.
[2] both strands.
[4] sites; fragments at the 3'-terminus.
[24] comp strand.
[30] fragments.
[22] sites; transcription termination sites.
[84] sites; cohesive ends.
[91] sites; Pre-promoter mutations.
[87] sites; attP recombination site.
[88] sites; major leftward transcription unit.
[89] sites; prohead binding.
[90] sites; cII binding site mutations.
[92] sites; nutR mutations.
[93] sites; light chain oligonucleotides.
[94] sites; nutL antiterminator.
[95] sites; rho utilization sites A and B.
Contributed on tape by F.Sanger via D.L.Daniels. Most of references
[3] through [85] are either annotated by [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4] and
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5], which are
the immediate sources for the annotation below, or they are cited
in Table 3 of [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4]. Only references [27] through
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] are represented
in the features table herein.
This is the best representation to date of the wild-type lambda
l-strand, though much of the sequence was determined for the
cI857s7 strain and changed to wild-type [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. All
reported
variations leading to the strains cI857s7, imm21, imm434, lac5,
Nin5 and b2 are included in the annotation. The first twelve bases
are the sticky ends. A significant fraction of the known mutations
affecting replication and transcription have been annotated below;
a large number of point mutations, deletions and substitutions have
not. For a complete account of lambda mutations in relation to the
sequence, see [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4].
Each coding sequence belongs to a reading frame (orf) whose number,
given in parentheses, should indicate the number of amino acids
coded. The starting points for translation are known with varying
degrees of certainty; for example, the start site for the N
protein, given here as 35438, may turn out to be downstream (on the
complementary strand) at 35360. When direct empirical evidence such
as mutation or amino acid sequence is lacking, the start point is
said to be putative. For a summary of the evidence bearing upon the
coding sequences, see [72],[(in) Hendrix,R.W., Roberts,J.W., Stahl,
F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. Intergenic spaces in
lambda are
typically short and overlapping: the multiple reading frames (mult)
range between a span of 1 and a span of 103. In most cases, a start
codon precedes a termination codon, exceptions being the m-l
boundary (13429) and the 314-194 boundary (21973) which show the
E.coli trp operon pattern of 'translational coupling' (see
<ecotrp>).
Transcription in the central region, bases 22686 to 37940, is
leftward off the l-strand. In our annotation, this is indicated by
the letter 'c' and the descriptive term 'comp strand'. Signals and
recognition sites in this region, without judgement made about
their polarity, are treated accordingly, hence their span should be
read toward the left rather than toward the right. Furthermore some
leftward transcription is located outside the central region, and
that is also indicated by 'c' and 'comp strand'. In general, the
estimates for the extent or span of signals (e.g. operators),
binding sites (e.g. Nutr, int-binding sites, etc.) and of the
attachment site (att) vary in the literature. This annotation
follows [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,
R.A. (Eds.);Lambda II: 4]. No attempt is made to annotate promoters
as signals
because of the indefiniteness of their span, however known promoter
mutants are given. The cII protein is known to bind in the -35
regions of p-i (29091) and pre(38369). Transcript termination sites
must be understood to be conditional on the N and Q proteins and
less than 100% efficient. There remain terminators to be found and
some of those annotated may have significance only in vitro.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..641
/organism="Escherichia virus Lambda"
/host="Escherichia coli"
/db_xref="taxon:10710"
Protein 1..641
/product="DNA packaging protein"
/calculated_mol_wt=73171
CDS 1..641
/gene="A"
/locus_tag="lambdap02"
/coded_by="NC_001416.1:711..2636"
/transl_table=11
/db_xref="GeneID:2703524"
ORIGIN
1 mnisnsqvnr lrhfvraglr slfrpepqta vewadanyyl pkesayqegr wetlpfqrai
61 mnamgsdyir evnvvksarv gyskmllgvy ayfiehkqrn tliwlptdgd aenfmkthve
121 ptirdipsll alapwygkkh rdntltmkrf tngrgfwclg gkaaknyrek svdvagydel
181 aafdddieqe gsptflgdkr iegsvwpksi rgstpkvrgt cqieraases phfmrfhvac
241 phcgeeqylk fgdketpfgl kwtpddpssv fylcehnacv irqqeldftd aryicektgi
301 wtrdgilwfs ssgeeieppd svtfhiwtay spfttwvqiv kdwmktkgdt gkrktfvntt
361 lgetweakig erpdaevmae rkehysapvp drvayltagi dsqldryemr vwgwgpgees
421 wlidrqiimg rhddeqtllr vdeainktyt rrngaemsis ricwdtggid ptivyerskk
481 hglfrvipik gasvygkpva smprkrnkng vylteigtdt akeqiynrft ltpegdeplp
541 gavhfpnnpd ifdlteaqql taeeqvekwv dgrkkilwds kkrrnealdc fvyalaalri
601 sisrwqldls allaslqeed gaatnkktla dyaralsged e
//
LOCUS NP_040582 68 aa linear PHG 11-MAR-2011
DEFINITION head-tail joining protein [Escherichia virus Lambda].
ACCESSION NP_040582
VERSION NP_040582.1
DBLINK BioProject: PRJNA14204
DBSOURCE REFSEQ: accession NC_001416.1
KEYWORDS RefSeq.
SOURCE Escherichia virus Lambda
ORGANISM Escherichia virus Lambda
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Lambdavirus.
REFERENCE 1 (sites)
AUTHORS Chen,C.Y. and Richardson,J.P.
TITLE Sequence elements essential for rho-dependent transcription
termination at lambda tR1
JOURNAL J. Biol. Chem. 262 (23), 11292-11299 (1987)
PUBMED 3038914
REFERENCE 2 (sites)
AUTHORS Peltz,S.W., Brown,A.L., Hasan,N., Podhajska,A.J. and Szybalski,W.
TITLE Thermosensitivity of a DNA recognition site: activity of a
truncated nutL antiterminator of coliphage lambda
JOURNAL Science 228 (4695), 91-93 (1985)
PUBMED 3156406
REFERENCE 3 (sites)
AUTHORS Coleclough,C. and Erlitz,F.L.
TITLE Use of primer-restriction-end adapters in a novel cDNA cloning
strategy
JOURNAL Gene 34 (2-3), 305-314 (1985)
PUBMED 2408965
REFERENCE 4 (sites)
AUTHORS Place,N., Fien,K., Mahoney,M.E., Wulff,D.L., Ho,Y.S., Debouck,C.,
Rosenberg,M., Shih,M.C. and Gussin,G.N.
TITLE Mutations that alter the DNA binding site for the bacteriophage
lambda cII protein and affect the translation efficiency of the cII
gene
JOURNAL J. Mol. Biol. 180 (4), 865-880 (1984)
PUBMED 6241264
REFERENCE 5 (sites)
AUTHORS Frackman,S., Siegele,D.A. and Feiss,M.
TITLE A functional domain of bacteriophage lambda terminase for prohead
binding
JOURNAL J. Mol. Biol. 180 (2), 283-300 (1984)
PUBMED 6096564
REFERENCE 6 (sites)
AUTHORS Craig,N.L. and Nash,H.A.
TITLE E. coli integration host factor binds to specific sites in DNA
JOURNAL Cell 39 (3 PT 2), 707-716 (1984)
PUBMED 6096022
REFERENCE 7 (sites)
AUTHORS Edlind,T.D., Cooley,T.E., Richards,S.H. and Ihler,G.M.
TITLE Long range base-pairing in the leftward transcription unit of
bacteriophage lambda. Characterization by electron microscopy and
computer-aided sequence analysis
JOURNAL J. Mol. Biol. 179 (3), 351-365 (1984)
PUBMED 6096550
REFERENCE 8 (sites)
AUTHORS Warren,F. and Das,A.
TITLE Formation of termination-resistant transcription complex at phage
lambda nut locus: effects of altered translation and a ribosomal
mutation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (12), 3612-3616 (1984)
PUBMED 6233610
REFERENCE 9 (sites)
AUTHORS Wulff,D.L., Mahoney,M., Shatzman,A. and Rosenberg,M.
TITLE Mutational analysis of a regulatory region in bacteriophage lambda
that has overlapping signals for the initiation of transcription
and translation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 555-559 (1984)
PUBMED 6229793
REFERENCE 10 (sites)
AUTHORS Hohn,B.
TITLE DNA sequences necessary for packaging of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (24), 7456-7460 (1983)
PUBMED 6324174
REFERENCE 11 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F. and
Blattner,F.R.
TITLE Appendix I: A molecular map of coliphage lambda
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 469-517;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 12 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F.,
Coulson,A.R., Hong,G.F., Hill,D.F., Petersen,G.B. and Blattner,F.R.
TITLE Appendix II: Complete annotated lambda sequence
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 519-674;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 13 (residues 1 to 68)
AUTHORS Sanger,F., Coulson,A.R., Hong,G.F., Hill,D.F. and Petersen,G.B.
TITLE Nucleotide sequence of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 162 (4), 729-773 (1982)
PUBMED 6221115
REFERENCE 14 (sites)
AUTHORS Adhya,S. and Gottesman,M.
TITLE Control of transcription termination
JOURNAL Annu. Rev. Biochem. 47, 967-996 (1978)
PUBMED 354508
REFERENCE 15 (sites)
AUTHORS Weigel,P.H., Englund,P.T., Murray,K. and Old,R.W.
TITLE The 3'-terminal nucleotide sequences of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 70 (4), 1151-1155 (1973)
PUBMED 4515613
REFERENCE 16 (residues 1 to 68)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AAA96535.
[36] r-strand.
[72] fragments.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,R.A.
(Eds.);Lambda II: 4] review; complete genome.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] review; complete genome with annotation.
[2] both strands.
[4] sites; fragments at the 3'-terminus.
[24] comp strand.
[30] fragments.
[22] sites; transcription termination sites.
[84] sites; cohesive ends.
[91] sites; Pre-promoter mutations.
[87] sites; attP recombination site.
[88] sites; major leftward transcription unit.
[89] sites; prohead binding.
[90] sites; cII binding site mutations.
[92] sites; nutR mutations.
[93] sites; light chain oligonucleotides.
[94] sites; nutL antiterminator.
[95] sites; rho utilization sites A and B.
Contributed on tape by F.Sanger via D.L.Daniels. Most of references
[3] through [85] are either annotated by [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4] and
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5], which are
the immediate sources for the annotation below, or they are cited
in Table 3 of [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4]. Only references [27] through
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] are represented
in the features table herein.
This is the best representation to date of the wild-type lambda
l-strand, though much of the sequence was determined for the
cI857s7 strain and changed to wild-type [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. All
reported
variations leading to the strains cI857s7, imm21, imm434, lac5,
Nin5 and b2 are included in the annotation. The first twelve bases
are the sticky ends. A significant fraction of the known mutations
affecting replication and transcription have been annotated below;
a large number of point mutations, deletions and substitutions have
not. For a complete account of lambda mutations in relation to the
sequence, see [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4].
Each coding sequence belongs to a reading frame (orf) whose number,
given in parentheses, should indicate the number of amino acids
coded. The starting points for translation are known with varying
degrees of certainty; for example, the start site for the N
protein, given here as 35438, may turn out to be downstream (on the
complementary strand) at 35360. When direct empirical evidence such
as mutation or amino acid sequence is lacking, the start point is
said to be putative. For a summary of the evidence bearing upon the
coding sequences, see [72],[(in) Hendrix,R.W., Roberts,J.W., Stahl,
F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. Intergenic spaces in
lambda are
typically short and overlapping: the multiple reading frames (mult)
range between a span of 1 and a span of 103. In most cases, a start
codon precedes a termination codon, exceptions being the m-l
boundary (13429) and the 314-194 boundary (21973) which show the
E.coli trp operon pattern of 'translational coupling' (see
<ecotrp>).
Transcription in the central region, bases 22686 to 37940, is
leftward off the l-strand. In our annotation, this is indicated by
the letter 'c' and the descriptive term 'comp strand'. Signals and
recognition sites in this region, without judgement made about
their polarity, are treated accordingly, hence their span should be
read toward the left rather than toward the right. Furthermore some
leftward transcription is located outside the central region, and
that is also indicated by 'c' and 'comp strand'. In general, the
estimates for the extent or span of signals (e.g. operators),
binding sites (e.g. Nutr, int-binding sites, etc.) and of the
attachment site (att) vary in the literature. This annotation
follows [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,
R.A. (Eds.);Lambda II: 4]. No attempt is made to annotate promoters
as signals
because of the indefiniteness of their span, however known promoter
mutants are given. The cII protein is known to bind in the -35
regions of p-i (29091) and pre(38369). Transcript termination sites
must be understood to be conditional on the N and Q proteins and
less than 100% efficient. There remain terminators to be found and
some of those annotated may have significance only in vitro.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..68
/organism="Escherichia virus Lambda"
/host="Escherichia coli"
/db_xref="taxon:10710"
Protein 1..68
/product="head-tail joining protein"
/calculated_mol_wt=7482
CDS 1..68
/gene="W"
/locus_tag="lambdap03"
/coded_by="NC_001416.1:2633..2839"
/transl_table=11
/db_xref="GeneID:2703525"
ORIGIN
1 mtrqeelaaa raalhdlmtg krvatvqkdg rrveftatsv sdlkkyiael evqtgmtqrr
61 rgpagfyv
//
LOCUS NP_040583 533 aa linear PHG 11-MAR-2011
DEFINITION capsid component [Escherichia virus Lambda].
ACCESSION NP_040583
VERSION NP_040583.1
DBLINK BioProject: PRJNA14204
DBSOURCE REFSEQ: accession NC_001416.1
KEYWORDS RefSeq.
SOURCE Escherichia virus Lambda
ORGANISM Escherichia virus Lambda
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Lambdavirus.
REFERENCE 1 (sites)
AUTHORS Chen,C.Y. and Richardson,J.P.
TITLE Sequence elements essential for rho-dependent transcription
termination at lambda tR1
JOURNAL J. Biol. Chem. 262 (23), 11292-11299 (1987)
PUBMED 3038914
REFERENCE 2 (sites)
AUTHORS Peltz,S.W., Brown,A.L., Hasan,N., Podhajska,A.J. and Szybalski,W.
TITLE Thermosensitivity of a DNA recognition site: activity of a
truncated nutL antiterminator of coliphage lambda
JOURNAL Science 228 (4695), 91-93 (1985)
PUBMED 3156406
REFERENCE 3 (sites)
AUTHORS Coleclough,C. and Erlitz,F.L.
TITLE Use of primer-restriction-end adapters in a novel cDNA cloning
strategy
JOURNAL Gene 34 (2-3), 305-314 (1985)
PUBMED 2408965
REFERENCE 4 (sites)
AUTHORS Place,N., Fien,K., Mahoney,M.E., Wulff,D.L., Ho,Y.S., Debouck,C.,
Rosenberg,M., Shih,M.C. and Gussin,G.N.
TITLE Mutations that alter the DNA binding site for the bacteriophage
lambda cII protein and affect the translation efficiency of the cII
gene
JOURNAL J. Mol. Biol. 180 (4), 865-880 (1984)
PUBMED 6241264
REFERENCE 5 (sites)
AUTHORS Frackman,S., Siegele,D.A. and Feiss,M.
TITLE A functional domain of bacteriophage lambda terminase for prohead
binding
JOURNAL J. Mol. Biol. 180 (2), 283-300 (1984)
PUBMED 6096564
REFERENCE 6 (sites)
AUTHORS Craig,N.L. and Nash,H.A.
TITLE E. coli integration host factor binds to specific sites in DNA
JOURNAL Cell 39 (3 PT 2), 707-716 (1984)
PUBMED 6096022
REFERENCE 7 (sites)
AUTHORS Edlind,T.D., Cooley,T.E., Richards,S.H. and Ihler,G.M.
TITLE Long range base-pairing in the leftward transcription unit of
bacteriophage lambda. Characterization by electron microscopy and
computer-aided sequence analysis
JOURNAL J. Mol. Biol. 179 (3), 351-365 (1984)
PUBMED 6096550
REFERENCE 8 (sites)
AUTHORS Warren,F. and Das,A.
TITLE Formation of termination-resistant transcription complex at phage
lambda nut locus: effects of altered translation and a ribosomal
mutation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (12), 3612-3616 (1984)
PUBMED 6233610
REFERENCE 9 (sites)
AUTHORS Wulff,D.L., Mahoney,M., Shatzman,A. and Rosenberg,M.
TITLE Mutational analysis of a regulatory region in bacteriophage lambda
that has overlapping signals for the initiation of transcription
and translation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 555-559 (1984)
PUBMED 6229793
REFERENCE 10 (sites)
AUTHORS Hohn,B.
TITLE DNA sequences necessary for packaging of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (24), 7456-7460 (1983)
PUBMED 6324174
REFERENCE 11 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F. and
Blattner,F.R.
TITLE Appendix I: A molecular map of coliphage lambda
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 469-517;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 12 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F.,
Coulson,A.R., Hong,G.F., Hill,D.F., Petersen,G.B. and Blattner,F.R.
TITLE Appendix II: Complete annotated lambda sequence
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 519-674;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 13 (residues 1 to 533)
AUTHORS Sanger,F., Coulson,A.R., Hong,G.F., Hill,D.F. and Petersen,G.B.
TITLE Nucleotide sequence of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 162 (4), 729-773 (1982)
PUBMED 6221115
REFERENCE 14 (sites)
AUTHORS Adhya,S. and Gottesman,M.
TITLE Control of transcription termination
JOURNAL Annu. Rev. Biochem. 47, 967-996 (1978)
PUBMED 354508
REFERENCE 15 (sites)
AUTHORS Weigel,P.H., Englund,P.T., Murray,K. and Old,R.W.
TITLE The 3'-terminal nucleotide sequences of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 70 (4), 1151-1155 (1973)
PUBMED 4515613
REFERENCE 16 (residues 1 to 533)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AAA96536.
[36] r-strand.
[72] fragments.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,R.A.
(Eds.);Lambda II: 4] review; complete genome.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] review; complete genome with annotation.
[2] both strands.
[4] sites; fragments at the 3'-terminus.
[24] comp strand.
[30] fragments.
[22] sites; transcription termination sites.
[84] sites; cohesive ends.
[91] sites; Pre-promoter mutations.
[87] sites; attP recombination site.
[88] sites; major leftward transcription unit.
[89] sites; prohead binding.
[90] sites; cII binding site mutations.
[92] sites; nutR mutations.
[93] sites; light chain oligonucleotides.
[94] sites; nutL antiterminator.
[95] sites; rho utilization sites A and B.
Contributed on tape by F.Sanger via D.L.Daniels. Most of references
[3] through [85] are either annotated by [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4] and
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5], which are
the immediate sources for the annotation below, or they are cited
in Table 3 of [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4]. Only references [27] through
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] are represented
in the features table herein.
This is the best representation to date of the wild-type lambda
l-strand, though much of the sequence was determined for the
cI857s7 strain and changed to wild-type [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. All
reported
variations leading to the strains cI857s7, imm21, imm434, lac5,
Nin5 and b2 are included in the annotation. The first twelve bases
are the sticky ends. A significant fraction of the known mutations
affecting replication and transcription have been annotated below;
a large number of point mutations, deletions and substitutions have
not. For a complete account of lambda mutations in relation to the
sequence, see [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4].
Each coding sequence belongs to a reading frame (orf) whose number,
given in parentheses, should indicate the number of amino acids
coded. The starting points for translation are known with varying
degrees of certainty; for example, the start site for the N
protein, given here as 35438, may turn out to be downstream (on the
complementary strand) at 35360. When direct empirical evidence such
as mutation or amino acid sequence is lacking, the start point is
said to be putative. For a summary of the evidence bearing upon the
coding sequences, see [72],[(in) Hendrix,R.W., Roberts,J.W., Stahl,
F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. Intergenic spaces in
lambda are
typically short and overlapping: the multiple reading frames (mult)
range between a span of 1 and a span of 103. In most cases, a start
codon precedes a termination codon, exceptions being the m-l
boundary (13429) and the 314-194 boundary (21973) which show the
E.coli trp operon pattern of 'translational coupling' (see
<ecotrp>).
Transcription in the central region, bases 22686 to 37940, is
leftward off the l-strand. In our annotation, this is indicated by
the letter 'c' and the descriptive term 'comp strand'. Signals and
recognition sites in this region, without judgement made about
their polarity, are treated accordingly, hence their span should be
read toward the left rather than toward the right. Furthermore some
leftward transcription is located outside the central region, and
that is also indicated by 'c' and 'comp strand'. In general, the
estimates for the extent or span of signals (e.g. operators),
binding sites (e.g. Nutr, int-binding sites, etc.) and of the
attachment site (att) vary in the literature. This annotation
follows [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,
R.A. (Eds.);Lambda II: 4]. No attempt is made to annotate promoters
as signals
because of the indefiniteness of their span, however known promoter
mutants are given. The cII protein is known to bind in the -35
regions of p-i (29091) and pre(38369). Transcript termination sites
must be understood to be conditional on the N and Q proteins and
less than 100% efficient. There remain terminators to be found and
some of those annotated may have significance only in vitro.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..533
/organism="Escherichia virus Lambda"
/host="Escherichia coli"
/db_xref="taxon:10710"
Protein 1..533
/product="capsid component"
/calculated_mol_wt=57091
sig_peptide 1..22
/product="hypothetical protein"
/note="leader peptide"
/calculated_mol_wt=2393
mat_peptide 23..533
/product="processed B"
/protein_id="NP_955536.1"
/calculated_mol_wt=57091
CDS 1..533
/gene="B"
/locus_tag="lambdap04"
/coded_by="NC_001416.1:2836..4437"
/transl_table=11
/db_xref="GeneID:2703526"
ORIGIN
1 mktptiptll gpdgmtslre yagyhgggsg fggqlrswnp psesvdaall pnftrgnara
61 ddlvrnngya anaiqlhqdh ivgsffrlsh rpswrylgig eeearafsre veaawkefae
121 ddcccidver krtftmmire gvamhafnge lfvqatwdts ssrlfrtqfr mvspkrisnp
181 nntgdsrncr agvqindsga algyyvsedg ypgwmpqkwt wiprelpggr asfihvfepv
241 edgqtrganv fysvmeqmkm ldtlqntqlq saivkamyaa tieseldtqs amdfilgans
301 qeqrerltgw igeiaayyaa apvrlggakv phlmpgdsln lqtaqdtdng ysvfeqsllr
361 yiaaglgvsy eqlsrnyaqm systarasan eswayfmgrr kfvasrqasq mflcwleeai
421 vrrvvtlpsk arfsfqears awgncdwigs grmaidglke vqeavmliea glstyekeca
481 krgddyqeif aqqvretmer raaglkppaw aaaafesglr qsteeeksds raa
//
LOCUS NP_040584 439 aa linear PHG 11-MAR-2011
DEFINITION capsid component [Escherichia virus Lambda].
ACCESSION NP_040584
VERSION NP_040584.1
DBLINK BioProject: PRJNA14204
DBSOURCE REFSEQ: accession NC_001416.1
KEYWORDS RefSeq.
SOURCE Escherichia virus Lambda
ORGANISM Escherichia virus Lambda
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Lambdavirus.
REFERENCE 1 (sites)
AUTHORS Chen,C.Y. and Richardson,J.P.
TITLE Sequence elements essential for rho-dependent transcription
termination at lambda tR1
JOURNAL J. Biol. Chem. 262 (23), 11292-11299 (1987)
PUBMED 3038914
REFERENCE 2 (sites)
AUTHORS Peltz,S.W., Brown,A.L., Hasan,N., Podhajska,A.J. and Szybalski,W.
TITLE Thermosensitivity of a DNA recognition site: activity of a
truncated nutL antiterminator of coliphage lambda
JOURNAL Science 228 (4695), 91-93 (1985)
PUBMED 3156406
REFERENCE 3 (sites)
AUTHORS Coleclough,C. and Erlitz,F.L.
TITLE Use of primer-restriction-end adapters in a novel cDNA cloning
strategy
JOURNAL Gene 34 (2-3), 305-314 (1985)
PUBMED 2408965
REFERENCE 4 (sites)
AUTHORS Place,N., Fien,K., Mahoney,M.E., Wulff,D.L., Ho,Y.S., Debouck,C.,
Rosenberg,M., Shih,M.C. and Gussin,G.N.
TITLE Mutations that alter the DNA binding site for the bacteriophage
lambda cII protein and affect the translation efficiency of the cII
gene
JOURNAL J. Mol. Biol. 180 (4), 865-880 (1984)
PUBMED 6241264
REFERENCE 5 (sites)
AUTHORS Frackman,S., Siegele,D.A. and Feiss,M.
TITLE A functional domain of bacteriophage lambda terminase for prohead
binding
JOURNAL J. Mol. Biol. 180 (2), 283-300 (1984)
PUBMED 6096564
REFERENCE 6 (sites)
AUTHORS Craig,N.L. and Nash,H.A.
TITLE E. coli integration host factor binds to specific sites in DNA
JOURNAL Cell 39 (3 PT 2), 707-716 (1984)
PUBMED 6096022
REFERENCE 7 (sites)
AUTHORS Edlind,T.D., Cooley,T.E., Richards,S.H. and Ihler,G.M.
TITLE Long range base-pairing in the leftward transcription unit of
bacteriophage lambda. Characterization by electron microscopy and
computer-aided sequence analysis
JOURNAL J. Mol. Biol. 179 (3), 351-365 (1984)
PUBMED 6096550
REFERENCE 8 (sites)
AUTHORS Warren,F. and Das,A.
TITLE Formation of termination-resistant transcription complex at phage
lambda nut locus: effects of altered translation and a ribosomal
mutation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (12), 3612-3616 (1984)
PUBMED 6233610
REFERENCE 9 (sites)
AUTHORS Wulff,D.L., Mahoney,M., Shatzman,A. and Rosenberg,M.
TITLE Mutational analysis of a regulatory region in bacteriophage lambda
that has overlapping signals for the initiation of transcription
and translation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 555-559 (1984)
PUBMED 6229793
REFERENCE 10 (sites)
AUTHORS Hohn,B.
TITLE DNA sequences necessary for packaging of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (24), 7456-7460 (1983)
PUBMED 6324174
REFERENCE 11 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F. and
Blattner,F.R.
TITLE Appendix I: A molecular map of coliphage lambda
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 469-517;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 12 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F.,
Coulson,A.R., Hong,G.F., Hill,D.F., Petersen,G.B. and Blattner,F.R.
TITLE Appendix II: Complete annotated lambda sequence
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 519-674;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 13 (residues 1 to 439)
AUTHORS Sanger,F., Coulson,A.R., Hong,G.F., Hill,D.F. and Petersen,G.B.
TITLE Nucleotide sequence of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 162 (4), 729-773 (1982)
PUBMED 6221115
REFERENCE 14 (sites)
AUTHORS Adhya,S. and Gottesman,M.
TITLE Control of transcription termination
JOURNAL Annu. Rev. Biochem. 47, 967-996 (1978)
PUBMED 354508
REFERENCE 15 (sites)
AUTHORS Weigel,P.H., Englund,P.T., Murray,K. and Old,R.W.
TITLE The 3'-terminal nucleotide sequences of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 70 (4), 1151-1155 (1973)
PUBMED 4515613
REFERENCE 16 (residues 1 to 439)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AAA96537.
[36] r-strand.
[72] fragments.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,R.A.
(Eds.);Lambda II: 4] review; complete genome.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] review; complete genome with annotation.
[2] both strands.
[4] sites; fragments at the 3'-terminus.
[24] comp strand.
[30] fragments.