-
Notifications
You must be signed in to change notification settings - Fork 4
/
Copy pathvir_genomic.gbff
3213 lines (3213 loc) · 172 KB
/
vir_genomic.gbff
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
LOCUS NC_001416 48502 bp DNA linear PHG 11-MAR-2011
DEFINITION Enterobacteria phage lambda, complete genome.
ACCESSION NC_001416
VERSION NC_001416.1
DBLINK BioProject: PRJNA14204
KEYWORDS RefSeq.
SOURCE Escherichia virus Lambda
ORGANISM Escherichia virus Lambda
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Lambdavirus.
REFERENCE 1 (sites)
AUTHORS Chen,C.Y. and Richardson,J.P.
TITLE Sequence elements essential for rho-dependent transcription
termination at lambda tR1
JOURNAL J. Biol. Chem. 262 (23), 11292-11299 (1987)
PUBMED 3038914
REFERENCE 2 (sites)
AUTHORS Peltz,S.W., Brown,A.L., Hasan,N., Podhajska,A.J. and Szybalski,W.
TITLE Thermosensitivity of a DNA recognition site: activity of a
truncated nutL antiterminator of coliphage lambda
JOURNAL Science 228 (4695), 91-93 (1985)
PUBMED 3156406
REFERENCE 3 (sites)
AUTHORS Coleclough,C. and Erlitz,F.L.
TITLE Use of primer-restriction-end adapters in a novel cDNA cloning
strategy
JOURNAL Gene 34 (2-3), 305-314 (1985)
PUBMED 2408965
REFERENCE 4 (sites)
AUTHORS Place,N., Fien,K., Mahoney,M.E., Wulff,D.L., Ho,Y.S., Debouck,C.,
Rosenberg,M., Shih,M.C. and Gussin,G.N.
TITLE Mutations that alter the DNA binding site for the bacteriophage
lambda cII protein and affect the translation efficiency of the cII
gene
JOURNAL J. Mol. Biol. 180 (4), 865-880 (1984)
PUBMED 6241264
REFERENCE 5 (sites)
AUTHORS Frackman,S., Siegele,D.A. and Feiss,M.
TITLE A functional domain of bacteriophage lambda terminase for prohead
binding
JOURNAL J. Mol. Biol. 180 (2), 283-300 (1984)
PUBMED 6096564
REFERENCE 6 (sites)
AUTHORS Craig,N.L. and Nash,H.A.
TITLE E. coli integration host factor binds to specific sites in DNA
JOURNAL Cell 39 (3 PT 2), 707-716 (1984)
PUBMED 6096022
REFERENCE 7 (sites)
AUTHORS Edlind,T.D., Cooley,T.E., Richards,S.H. and Ihler,G.M.
TITLE Long range base-pairing in the leftward transcription unit of
bacteriophage lambda. Characterization by electron microscopy and
computer-aided sequence analysis
JOURNAL J. Mol. Biol. 179 (3), 351-365 (1984)
PUBMED 6096550
REFERENCE 8 (sites)
AUTHORS Warren,F. and Das,A.
TITLE Formation of termination-resistant transcription complex at phage
lambda nut locus: effects of altered translation and a ribosomal
mutation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (12), 3612-3616 (1984)
PUBMED 6233610
REFERENCE 9 (sites)
AUTHORS Wulff,D.L., Mahoney,M., Shatzman,A. and Rosenberg,M.
TITLE Mutational analysis of a regulatory region in bacteriophage lambda
that has overlapping signals for the initiation of transcription
and translation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 555-559 (1984)
PUBMED 6229793
REFERENCE 10 (sites)
AUTHORS Hohn,B.
TITLE DNA sequences necessary for packaging of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (24), 7456-7460 (1983)
PUBMED 6324174
REFERENCE 11 (bases 45901 to 46443)
AUTHORS Taylor,A., Benedik,M. and Campbell,A.
TITLE Location of the Rz gene in bacteriophage lambda
JOURNAL Gene 26 (2-3), 159-163 (1983)
PUBMED 6323257
REFERENCE 12 (bases 48469 to 48498)
AUTHORS Miwa,T. and Matsubara,K.
TITLE Lambda phage DNA sequences affecting the packaging process
JOURNAL Gene 24 (2-3), 199-206 (1983)
PUBMED 6227527
REFERENCE 13 (bases 29063 to 29140)
AUTHORS Benedik,M., Mascarenhas,D. and Campbell,A.
TITLE The integrase promoter and T'I terminator in bacteriophages lambda
and 434
JOURNAL Virology 126 (2), 658-668 (1983)
PUBMED 6305007
REFERENCE 14 (bases 18414 to 18746)
AUTHORS Luk,K.C. and Szybalski,W.
TITLE A cluster of leftward, rho-dependent t'J terminators in the J gene
of coliphage lambda
JOURNAL Gene 21 (3), 175-191 (1983)
PUBMED 6221968
REFERENCE 15 (bases 33000 to 33244; 33420 to 33543; 33629 to 34080)
AUTHORS Luk,K.C. and Szybalski,W.
TITLE The tL2 cluster of transcription termination sites between genes
bet and ral of coliphage lambda
JOURNAL Virology 125 (2), 403-418 (1983)
PUBMED 6220515
REFERENCE 16 (bases 1 to 56; 48474 to 48502)
AUTHORS Feiss,M., Kobayashi,I. and Widner,W.
TITLE Separate sites for binding and nicking of bacteriophage lambda DNA
by terminase
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (4), 955-959 (1983)
PUBMED 6302676
REFERENCE 17 (bases 33287 to 33486)
AUTHORS Knight,D.M. and Echols,H.
TITLE The cIII gene and protein of bacteriophage lambda
JOURNAL J. Mol. Biol. 163 (3), 505-510 (1983)
PUBMED 6220158
REFERENCE 18 (bases 37938 to 38019)
AUTHORS Shih,M.C. and Gussin,G.N.
TITLE Mutations affecting two different steps in transcription initiation
at the phage lambda PRM promoter
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (2), 496-500 (1983)
PUBMED 6220405
REFERENCE 19 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F. and
Blattner,F.R.
TITLE Appendix I: A molecular map of coliphage lambda
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 469-517;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 20 (sites)
AUTHORS Daniels,D.L., Schroeder,J.L., Szybalski,W., Sanger,F.,
Coulson,A.R., Hong,G.F., Hill,D.F., Petersen,G.B. and Blattner,F.R.
TITLE Appendix II: Complete annotated lambda sequence
JOURNAL (in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,R.A.
(Eds.);
LAMBDA II: 519-674;
Cold Spring Harbor Laboratory, Cold Spring Harbor (1983)
REFERENCE 21 (bases 1 to 48502)
AUTHORS Sanger,F., Coulson,A.R., Hong,G.F., Hill,D.F. and Petersen,G.B.
TITLE Nucleotide sequence of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 162 (4), 729-773 (1982)
PUBMED 6221115
REFERENCE 22 (bases 48424 to 48500)
AUTHORS Miwa,T. and Matsubara,K.
TITLE Identification of sequences necessary for packaging DNA into lambda
phage heads
JOURNAL Gene 20 (2), 267-279 (1982)
PUBMED 6299893
REFERENCE 23 (bases 31299 to 31408)
AUTHORS Luk,K.C. and Szybalski,W.
TITLE Characterization of the cloned terminators tR1, tL3 and tI and the
nut R antitermination site of coliphage lambda
JOURNAL Gene 20 (2), 127-134 (1982)
PUBMED 6299882
REFERENCE 24 (bases 40218 to 43972)
AUTHORS Kroger,M. and Hobom,G.
TITLE A chain of interlinked genes in the ninR region of bacteriophage
lambda
JOURNAL Gene 20 (1), 25-38 (1982)
PUBMED 6219042
REFERENCE 25 (bases 35437 to 37348)
AUTHORS Landsmann,J., Kroger,M. and Hobom,G.
TITLE The rex region of bacteriophage lambda: two genes under three-way
control
JOURNAL Gene 20 (1), 11-24 (1982)
PUBMED 6219041
REFERENCE 26 (bases 2521 to 3300)
AUTHORS Hong,G.F.
TITLE Sequencing of large double-stranded DNA using the dideoxy
sequencing technique
JOURNAL Biosci. Rep. 2 (11), 907-912 (1982)
PUBMED 6218841
REFERENCE 27 (bases 38262 to 38386)
AUTHORS Lau,L.F., Roberts,J.W. and Wu,R.
TITLE Transcription terminates at lambda tR1 in three clusters
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (20), 6171-6175 (1982)
PUBMED 6216477
REFERENCE 28 (bases 25157 to 27484)
AUTHORS Hong,G.F.
TITLE A systemic DNA sequencing strategy
JOURNAL J. Mol. Biol. 158 (3), 539-549 (1982)
PUBMED 6290669
REFERENCE 29 (bases 37938 to 38018)
AUTHORS Hawley,D.K. and McClure,W.R.
TITLE Mechanism of activation of transcription initiation from the lambda
PRM promoter
JOURNAL J. Mol. Biol. 157 (3), 493-525 (1982)
PUBMED 6214638
REFERENCE 30 (bases 31299 to 31408)
AUTHORS Luk,K.C. and Szybalski,W.
TITLE Transcription termination: sequence and function of the
rho-independent tL3 terminator in the major leftward operon of
bacteriophage lambda
JOURNAL Gene 17 (3), 247-258 (1982)
PUBMED 6213446
REFERENCE 31 (bases 43682 to 45218)
AUTHORS Daniels,D.L. and Blattner,F.R.
TITLE Nucleotide sequence of the Q gene and the Q to S intergenic region
of bacteriophage lambda
JOURNAL Virology 117 (1), 81-92 (1982)
PUBMED 6461127
REFERENCE 32 (bases 39219 to 39338)
AUTHORS Moore,D.D. and Blattner,F.R.
TITLE Sequence of lambda ric5b
JOURNAL J. Mol. Biol. 154 (1), 81-83 (1982)
PUBMED 6210782
REFERENCE 33 (bases 35577 to 35647)
AUTHORS Hyman,H.C. and Honigman,A.
TITLE The use of the plasmid pHA10 in the isolation of lambda PL promoter
mutations
JOURNAL Mol. Gen. Genet. 185 (3), 515-517 (1982)
PUBMED 6285150
REFERENCE 34 (bases 27650 to 27741)
AUTHORS Kravchenko,V.V. and Mikryukov,N.N.
TITLE Localization of the promoter p-att of the binding site of
Escherichia coli polymerase on phage lambda DNA near the
integration site
JOURNAL Dokl. Biochem. 264, 148-151 (1982)
REFERENCE 35 (bases 35468 to 35541)
AUTHORS Drahos,D. and Szybalski,W.
TITLE Antitermination and termination functions of the cloned nutL, N,
and tL1 modules of coliphage lambda
JOURNAL Gene 16 (1-3), 261-274 (1981)
PUBMED 6211393
REFERENCE 36 (bases 43860 to 45001)
AUTHORS Petrov,N.A., Karginov,V.A., Mikriukov,N.N., Serpinski,O.I. and
Kravchenko,V.V.
TITLE Complete nucleotide sequence of the bacteriophage lambda DNA region
containing gene Q and promoter pR'
JOURNAL FEBS Lett. 133 (2), 316-320 (1981)
PUBMED 6458514
REFERENCE 37 (bases 35468 to 35711)
AUTHORS Remaut,E., Stanssens,P. and Fiers,W.
TITLE Plasmid vectors for high-efficiency expression controlled by the PL
promoter of coliphage lambda
JOURNAL Gene 15 (1), 81-93 (1981)
PUBMED 6271633
REFERENCE 38 (bases 32503 to 35905)
AUTHORS Ineichen,K., Shepherd,J.C. and Bickle,T.A.
TITLE The DNA sequence of the phage lambda genome between PL and the gene
bet
JOURNAL Nucleic Acids Res. 9 (18), 4639-4653 (1981)
PUBMED 6458018
REFERENCE 39 (bases 38686 to 39224)
AUTHORS Moore,D.D., Denniston,K.J. and Blattner,F.R.
TITLE Sequence organization of the origins of DNA replication in lambdoid
coliphages
JOURNAL Gene 14 (1-2), 91-101 (1981)
PUBMED 6455332
REFERENCE 40 (bases 35468 to 35819)
AUTHORS Horn,G.T. and Wells,R.D.
TITLE The leftward promoter of bacteriophage lambda. Isolation on a small
restriction fragment and deletion of adjacent regions
JOURNAL J. Biol. Chem. 256 (4), 1998-2002 (1981)
PUBMED 6257696
REFERENCE 41 (bases 29055 to 29124)
AUTHORS Abraham,J. and Echols,H.
TITLE Regulation of int gene transcription by bacteriophage lambda.
Location of the RNA start generated by an int constitutive mutation
JOURNAL J. Mol. Biol. 146 (1), 157-165 (1981)
PUBMED 6455532
REFERENCE 42 (bases 44972 to 45057)
AUTHORS Smith,G.R., Comb,M., Schultz,D.W., Daniels,D.L. and Blattner,F.R.
TITLE Nucleotide sequence of the chi recombinational hot spot chi +D in
bacteriophage lambda
JOURNAL J. Virol. 37 (1), 336-342 (1981)
PUBMED 6260986
REFERENCE 43 (bases 43681 to 45634)
AUTHORS Daniels,D.L.
TITLE Control of late transcription in bacteriophage lambda
JOURNAL Thesis (1981) University of Wisconsin-Madison
REFERENCE 44 (bases 29055 to 29131)
AUTHORS Miller,H.I., Abraham,J., Benedik,M., Campbell,A., Court,D.,
Echols,H., Fischer,R., Galindo,J.M., Guarneros,G., Hernandez,T.,
Mascarenhas,D., Montanez,C., Schindler,D., Schmeissner,U. and
Sosa,L.
TITLE Regulation of the integration-excision reaction by bacteriophage
lambda
JOURNAL Cold Spring Harb. Symp. Quant. Biol. 45 (PT 1), 439-445 (1981)
PUBMED 6271488
REFERENCE 45 (bases 23131 to 23248)
AUTHORS Rosenvold,E.C., Calva,E., Burgess,R.R. and Szybalski,W.
TITLE In vitro transcription from the b2 region of bacteriophage lambda
JOURNAL Virology 107 (2), 476-487 (1980)
PUBMED 6450480
REFERENCE 46 (bases 37305 to 37352)
AUTHORS Lieb,M.
TITLE IS5 increases recombination in adjacent regions as shown for the
repressor gene of coliphage lambda
JOURNAL Gene 12 (3-4), 277-280 (1980)
PUBMED 6265321
REFERENCE 47 (bases 38102 to 38166)
AUTHORS Calva,E. and Burgess,R.R.
TITLE Characterization of a rho-dependent termination site within the cro
gene of bacteriophage lambda
JOURNAL J. Biol. Chem. 255 (22), 11017-11022 (1980)
PUBMED 6448859
REFERENCE 48 (bases 37940 to 38016)
AUTHORS Rosen,E.D., Hartley,J.L., Matz,K., Nichols,B.P., Young,K.M.,
Donelson,J.E. and Gussin,G.N.
TITLE DNA sequence analysis of prm-mutations of coliphage lambda
JOURNAL Gene 11 (3-4), 197-205 (1980)
PUBMED 6452305
REFERENCE 49 (bases 27501 to 27615)
AUTHORS Mizuuchi,M. and Mizuuchi,K.
TITLE Integrative recombination of bacteriophage lambda: extent of the
DNA sequence involved in attachment site function
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77 (6), 3220-3224 (1980)
PUBMED 6251450
REFERENCE 50 (bases 37940 to 38023)
AUTHORS Meyer,B.J., Maurer,R. and Ptashne,M.
TITLE Gene regulation at the right operator (OR) of bacteriophage lambda.
II. OR1, OR2, and OR3: their roles in mediating the effects of
repressor and cro
JOURNAL J. Mol. Biol. 139 (2), 163-194 (1980)
PUBMED 6447795
REFERENCE 51 (bases 27479 to 27633)
AUTHORS Hsu,P.L., Ross,W. and Landy,A.
TITLE The lambda phage att site: functional limits and interaction with
Int protein
JOURNAL Nature 285 (5760), 85-91 (1980)
PUBMED 6246439
REFERENCE 52 (bases 27724 to 29275)
AUTHORS Hoess,R.H., Foeller,C., Bidwell,K. and Landy,A.
TITLE Site-specific recombination functions of bacteriophage lambda: DNA
sequence of regulatory regions and overlapping structural genes for
Int and Xis
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77 (5), 2482-2486 (1980)
PUBMED 6446713
REFERENCE 53 (bases 28929 to 29198)
AUTHORS Abraham,J., Mascarenhas,D., Fischer,R., Benedik,M., Campbell,A. and
Echols,H.
TITLE DNA sequence of regulatory region for integration gene of
bacteriophage lambda
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77 (5), 2477-2481 (1980)
PUBMED 6446712
REFERENCE 54 (bases 27724 to 29525)
AUTHORS Davies,R.W.
TITLE DNA sequence of the int-xis-Pi region of the bacteriophage lambda;
overlap of the int and xis genes
JOURNAL Nucleic Acids Res. 8 (8), 1765-1782 (1980)
PUBMED 6253947
REFERENCE 55 (bases 38237 to 38334)
AUTHORS Court,D., Brady,C., Rosenberg,M., Wulff,D.L., Behr,M., Mahoney,M.
and Izumi,S.U.
TITLE Control of transcription termination: a rho-dependent termination
site in bacteriophage lambda
JOURNAL J. Mol. Biol. 138 (2), 231-254 (1980)
PUBMED 6447791
REFERENCE 56 (bases 38212 to 38467)
AUTHORS Wulff,D.L., Beher,M., Izumi,S., Beck,J., Mahoney,M., Shimatake,H.,
Brady,C., Court,D. and Rosenberg,M.
TITLE Structure and function of the cy control region of bacteriophage
lambda
JOURNAL J. Mol. Biol. 138 (2), 209-230 (1980)
PUBMED 6447790
REFERENCE 57 (bases 30493 to 30569)
AUTHORS Smith,G.R., Schultz,D.W. and Crasemann,J.M.
TITLE Generalized recombination: nucleotide sequence homology between Chi
recombinational hotspots
JOURNAL Cell 19 (3), 785-793 (1980)
PUBMED 6244897
REFERENCE 58 (bases 36245 to 36343)
AUTHORS Pirrotta,V., Ineichen,K. and Walz,A.
TITLE An unusual RNA polymerase binding site in the immunity region of
phage lambda
JOURNAL Mol. Gen. Genet. 180 (2), 369-376 (1980)
PUBMED 6450873
REFERENCE 59 (bases 37768 to 40293)
AUTHORS Schwarz,E., Scherer,G., Hobom,G. and Kossel,H.
TITLE The primary structure of the phage lambda P gene completes the
nucleotide sequence of the plasmid lambda-dvh93
JOURNAL Biochem. Int. 1, 386-394 (1980)
REFERENCE 60 (bases 34957 to 35615)
AUTHORS Franklin,N.C. and Bennett,G.N.
TITLE The N protein of bacteriophage lambda, defined by its DNA sequence,
is highly basic
JOURNAL Gene 8 (1), 107-119 (1979)
PUBMED 43815
REFERENCE 61 (bases 27711 to 27826)
AUTHORS Ross,W., Landy,A., Kikuchi,Y. and Nash,H.
TITLE Interaction of int protein with specific sites on lambda att DNA
JOURNAL Cell 18 (2), 297-307 (1979)
PUBMED 159130
REFERENCE 62 (bases 38453 to 38500)
AUTHORS Smith,G.R., Faulds,D.H. and Sprague,K.U.
TITLE Nucleotide-sequence analysis of a chi site
JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (PT 2), 1067-1068 (1979)
PUBMED 158460
REFERENCE 63 (bases 38470 to 39189)
AUTHORS Hobom,G., Grosschedl,R., Lusky,M., Scherer,G., Schwarz,E. and
Kossel,H.
TITLE Functional analysis of the replicator structure of lambdoid
bacteriophage DNAs
JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (PT 1), 165-178 (1979)
PUBMED 157835
REFERENCE 64 (bases 38008 to 39328)
AUTHORS Moore,D.D., Denniston-Thompson,K., Kruger,K.E., Furth,M.E.,
Williams,B.G., Daniels,D.L. and Blattner,F.R.
TITLE Dissection and comparative anatomy of the origins of replication of
lambdoid phages
JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (PT 1), 155-163 (1979)
PUBMED 157834
REFERENCE 65 (bases 38453 to 38500)
AUTHORS Sprague,K.U., Faulds,D.H. and Smith,G.R.
TITLE A single base-pair change creates a Chi recombinational hotspot in
bacteriophage lambda
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 75 (12), 6182-6186 (1978)
PUBMED 282634
REFERENCE 66 (bases 37224 to 37940)
AUTHORS Sauer,R.T.
TITLE DNA sequence of the bacteriophage gama cI gene
JOURNAL Nature 276 (5685), 301-302 (1978)
PUBMED 714163
REFERENCE 67 (bases 21661 to 31129)
AUTHORS Hoess,R.H. and Landy,A.
TITLE Structure of the lambda att sites generated by int-dependent
deletions
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 75 (11), 5437-5441 (1978)
PUBMED 364480
REFERENCE 68 (bases 35589 to 35666; 37938 to 38016)
AUTHORS Flashman,S.M.
TITLE Mutational analysis of the operators of bacteriophage lambda
JOURNAL Mol. Gen. Genet. 166 (1), 61-73 (1978)
PUBMED 368570
REFERENCE 69 (bases 29711 to 29811; 31043 to 31058)
AUTHORS Davies,R.W., Schreier,P.H. and Buchel,D.E.
TITLE Determination of the endpoints of partial deletion mutants of the
attachment site of bacteriophage lambda by DNA sequencing
JOURNAL Nucleic Acids Res. 5 (9), 3209-3218 (1978)
PUBMED 704352
REFERENCE 70 (bases 38597 to 39688)
AUTHORS Scherer,G.
TITLE Nucleotide sequence of the O gene and of the origin of replication
in bacteriophage lambda DNA
JOURNAL Nucleic Acids Res. 5 (9), 3141-3156 (1978)
PUBMED 704348
REFERENCE 71 (bases 13 to 72; 48391 to 48502)
AUTHORS Nichols,B.P. and Donelson,J.E.
TITLE 178-Nucleotide sequence surrounding the cos site of bacteriophage
lambda DNA
JOURNAL J. Virol. 26 (2), 429-434 (1978)
PUBMED 666898
REFERENCE 72 (bases 38212 to 38362)
AUTHORS Rosenberg,M., Court,D., Shimatake,H., Brady,C. and Wulff,D.L.
TITLE The relationship between function and DNA sequence in an
intercistronic regulatory region in phage lambda
JOURNAL Nature 272 (5652), 414-423 (1978)
PUBMED 634366
REFERENCE 73 (bases 37990 to 38982)
AUTHORS Schwarz,E., Scherer,G., Hobom,G. and Kossel,H.
TITLE Nucleotide sequence of cro, cII and part of the O gene in phage
lambda DNA
JOURNAL Nature 272 (5652), 410-414 (1978)
PUBMED 264238
REFERENCE 74 (sites)
AUTHORS Adhya,S. and Gottesman,M.
TITLE Control of transcription termination
JOURNAL Annu. Rev. Biochem. 47, 967-996 (1978)
PUBMED 354508
REFERENCE 75 (bases 27616 to 28935)
AUTHORS Davies,R.W., Schreier,P.H. and Buchel,D.E.
TITLE Nucleotide sequence of the attachment site of coliphage lambda
JOURNAL Nature 270 (5639), 757-760 (1977)
PUBMED 593399
REFERENCE 76 (bases 39062 to 39170)
AUTHORS Denniston-Thompson,K., Moore,D.D., Kruger,K.E., Furth,M.E. and
Blattner,F.R.
TITLE Physical structure of the replication origin of bacteriophage
lambda
JOURNAL Science 198 (4321), 1051-1056 (1977)
PUBMED 929187
REFERENCE 77 (bases 38041 to 38241)
AUTHORS Roberts,T.M., Shimatake,H., Brady,C. and Rosenberg,M.
TITLE Sequence of Cro gene of bacteriophage lambda
JOURNAL Nature 270 (5634), 274-275 (1977)
PUBMED 593347
REFERENCE 78 (bases 27617 to 27934)
AUTHORS Landy,A. and Ross,W.
TITLE Viral integration and excision: structure of the lambda att sites
JOURNAL Science 197 (4309), 1147-1160 (1977)
PUBMED 331474
REFERENCE 79 (bases 37206 to 37263; 37914 to 37970)
AUTHORS Humayun,Z.
TITLE DNA sequence at the end of the cI gene in bacteriophage lambda
JOURNAL Nucleic Acids Res. 4 (7), 2137-2143 (1977)
PUBMED 909767
REFERENCE 80 (bases 35578 to 35667)
AUTHORS Humayun,Z., Jeffrey,A. and Ptashne,M.
TITLE Completed DNA sequences and organization of repressor-binding sites
in the operators of phage lambda
JOURNAL J. Mol. Biol. 112 (2), 265-277 (1977)
PUBMED 875019
REFERENCE 81 (bases 38610 to 38732)
AUTHORS Scherer,G., Hobom,G. and Kossel,H.
TITLE DNA base sequence of the po promoter region of phage lamdba
JOURNAL Nature 265 (5590), 117-121 (1977)
PUBMED 834253
REFERENCE 82 (bases 44467 to 44807)
AUTHORS Sklar,J.L.
TITLE Structure and function of two regions of DNA controlling the
synthesis of prokaryotic RNAs
JOURNAL Thesis (1977)
REFERENCE 83 (bases 35578 to 35667; 37903 to 38027)
AUTHORS Ptashne,M., Backman,K., Humayun,M.Z., Jeffrey,A., Maurer,R.,
Meyer,B. and Sauer,R.T.
TITLE Autoregulation and function of a repressor in bacteriophage lambda
JOURNAL Science 194 (4261), 156-161 (1976)
PUBMED 959843
REFERENCE 84 (bases 37905 to 37989)
AUTHORS Walz,A., Pirrotta,V. and Ineichen,K.
TITLE Lambda repressor regulates the switch between PR and Prm promoters
JOURNAL Nature 262 (5570), 665-669 (1976)
PUBMED 958438
REFERENCE 85 (bases 37946 to 38039)
AUTHORS Smith,G.R., Eisen,H., Reichardt,L. and Hedgepeth,J.
TITLE Deletions of lambda phage locating a prm mutation within the
rightward operator
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 73 (3), 712-716 (1976)
PUBMED 1062780
REFERENCE 86 (bases 35434 to 35618)
AUTHORS Dahlberg,J.E. and Blattner,F.R.
TITLE Sequence of the promoter-operator proximal region of the major
leftward RNA of bacteriophage lambda
JOURNAL Nucleic Acids Res. 2 (9), 1441-1458 (1975)
PUBMED 1178525
REFERENCE 87 (bases 35583 to 35600)
AUTHORS Kleid,D.G., Agarwal,K.L. and Khorana,H.G.
TITLE The nucleotide sequence in the promoter region of the gene N in
bacteriophage lambda
JOURNAL J. Biol. Chem. 250 (14), 5574-5582 (1975)
PUBMED 167018
REFERENCE 88 (bases 37945 to 38027)
AUTHORS Maniatis,T., Ptashne,M., Backman,K., Kield,D., Flashman,S.,
Jeffrey,A. and Maurer,R.
TITLE Recognition sequences of repressor and polymerase in the operators
of bacteriophage lambda
JOURNAL Cell 5 (2), 109-113 (1975)
PUBMED 1095210
REFERENCE 89 (bases 44588 to 44773)
AUTHORS Sklar,J., Yot,P. and Weissman,S.M.
TITLE Determination of genes, restriction sites, and DNA sequences
surrounding the 6S RNA template of bacteriophage lambda
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 72 (5), 1817-1821 (1975)
PUBMED 1098044
REFERENCE 90 (bases 37945 to 38018)
AUTHORS Maniatis,T., Jeffrey,A. and Kleid,D.G.
TITLE Nucleotide sequence of the rightward operator of phage lambda
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 72 (3), 1184-1188 (1975)
PUBMED 1055375
REFERENCE 91 (sites)
AUTHORS Weigel,P.H., Englund,P.T., Murray,K. and Old,R.W.
TITLE The 3'-terminal nucleotide sequences of bacteriophage lambda DNA
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 70 (4), 1151-1155 (1973)
PUBMED 4515613
REFERENCE 92 (bases 38597 to 38672)
AUTHORS Dahlberg,J.E. and Blattner,F.R.
TITLE In vitro transcription products of lambda DNA: Nucleotide sequences
and regulatory sites
JOURNAL (in) Fox,C.F. and Robinson,W.S. (Eds.);
VIRUS RESEARCH. PROCEEDINGS OF 1973 ICN-UCLA SYMPOSIUM: 533-544;
Academic Press, New York (1973)
REFERENCE 93 (bases 45493 to 45963)
AUTHORS Imada,M. and Tsugita,A.
TITLE Amino-acid sequence of lambda phage endolysin
JOURNAL Nature New Biol. 233 (42), 230-231 (1971)
PUBMED 20480992
REFERENCE 94 (bases 44588 to 44780)
AUTHORS Lebowitz,P., Weissman,S.M. and Radding,C.M.
TITLE Nucleotide sequence of a ribonucleic acid transcribed in vitro from
lambda phage deoxyribonucleic acid
JOURNAL J. Biol. Chem. 246 (16), 5120-5139 (1971)
PUBMED 4936723
REFERENCE 95 (bases 1 to 12)
AUTHORS Wu,R. and Taylor,E.
TITLE Nucleotide sequence analysis of DNA. II. Complete nucleotide
sequence of the cohesive ends of bacteriophage lambda DNA
JOURNAL J. Mol. Biol. 57 (3), 491-511 (1971)
PUBMED 4931680
REFERENCE 96 (bases 1 to 48502)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from J02459.
[36] r-strand.
[72] fragments.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,R.A.
(Eds.);Lambda II: 4] review; complete genome.
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] review; complete genome with annotation.
[2] both strands.
[4] sites; fragments at the 3'-terminus.
[24] comp strand.
[30] fragments.
[22] sites; transcription termination sites.
[84] sites; cohesive ends.
[91] sites; Pre-promoter mutations.
[87] sites; attP recombination site.
[88] sites; major leftward transcription unit.
[89] sites; prohead binding.
[90] sites; cII binding site mutations.
[92] sites; nutR mutations.
[93] sites; light chain oligonucleotides.
[94] sites; nutL antiterminator.
[95] sites; rho utilization sites A and B.
Contributed on tape by F.Sanger via D.L.Daniels. Most of references
[3] through [85] are either annotated by [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4] and
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5], which are
the immediate sources for the annotation below, or they are cited
in Table 3 of [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4]. Only references [27] through
[(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. and Weisberg,
R.A.(Eds.);Lambda II: 5] are represented
in the features table herein.
This is the best representation to date of the wild-type lambda
l-strand, though much of the sequence was determined for the
cI857s7 strain and changed to wild-type [(in) Hendrix,R.W.,
Roberts,J.W., Stahl,F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. All
reported
variations leading to the strains cI857s7, imm21, imm434, lac5,
Nin5 and b2 are included in the annotation. The first twelve bases
are the sticky ends. A significant fraction of the known mutations
affecting replication and transcription have been annotated below;
a large number of point mutations, deletions and substitutions have
not. For a complete account of lambda mutations in relation to the
sequence, see [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W.
andWeisberg,R.A. (Eds.);Lambda II: 4].
Each coding sequence belongs to a reading frame (orf) whose number,
given in parentheses, should indicate the number of amino acids
coded. The starting points for translation are known with varying
degrees of certainty; for example, the start site for the N
protein, given here as 35438, may turn out to be downstream (on the
complementary strand) at 35360. When direct empirical evidence such
as mutation or amino acid sequence is lacking, the start point is
said to be putative. For a summary of the evidence bearing upon the
coding sequences, see [72],[(in) Hendrix,R.W., Roberts,J.W., Stahl,
F.W. andWeisberg,R.A. (Eds.);Lambda II: 4]. Intergenic spaces in
lambda are
typically short and overlapping: the multiple reading frames (mult)
range between a span of 1 and a span of 103. In most cases, a start
codon precedes a termination codon, exceptions being the m-l
boundary (13429) and the 314-194 boundary (21973) which show the
E.coli trp operon pattern of 'translational coupling' (see
<ecotrp>).
Transcription in the central region, bases 22686 to 37940, is
leftward off the l-strand. In our annotation, this is indicated by
the letter 'c' and the descriptive term 'comp strand'. Signals and
recognition sites in this region, without judgement made about
their polarity, are treated accordingly, hence their span should be
read toward the left rather than toward the right. Furthermore some
leftward transcription is located outside the central region, and
that is also indicated by 'c' and 'comp strand'. In general, the
estimates for the extent or span of signals (e.g. operators),
binding sites (e.g. Nutr, int-binding sites, etc.) and of the
attachment site (att) vary in the literature. This annotation
follows [(in) Hendrix,R.W., Roberts,J.W., Stahl,F.W. andWeisberg,
R.A. (Eds.);Lambda II: 4]. No attempt is made to annotate promoters
as signals
because of the indefiniteness of their span, however known promoter
mutants are given. The cII protein is known to bind in the -35
regions of p-i (29091) and pre(38369). Transcript termination sites
must be understood to be conditional on the N and Q proteins and
less than 100% efficient. There remain terminators to be found and
some of those annotated may have significance only in vitro.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..48502
/organism="Escherichia virus Lambda"
/mol_type="genomic DNA"
/host="Escherichia coli"
/db_xref="taxon:10710"
gene 191..736
/gene="nu1"
/locus_tag="lambdap01"
/db_xref="GeneID:2703523"
CDS 191..736
/gene="nu1"
/locus_tag="lambdap01"
/codon_start=1
/transl_table=11
/product="DNA packaging protein"
/protein_id="NP_040580.1"
/db_xref="GeneID:2703523"
/translation="MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSA
AVIKWYAERDAEIENEKLRREVEELRQASEADLQPGTIEYERHRLTRAQADAQELKNA
RDSAEVVETAFCTFVLSRIAGEIASILDGLPLSVQRRFPELENRHVDFLKRDIIKAMN
KAAALDELIPGLLSEYIEQSG"
gene 711..2636
/gene="A"
/locus_tag="lambdap02"
/db_xref="GeneID:2703524"
CDS 711..2636
/gene="A"
/locus_tag="lambdap02"
/codon_start=1
/transl_table=11
/product="DNA packaging protein"
/protein_id="NP_040581.1"
/db_xref="GeneID:2703524"
/translation="MNISNSQVNRLRHFVRAGLRSLFRPEPQTAVEWADANYYLPKES
AYQEGRWETLPFQRAIMNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTL
IWLPTDGDAENFMKTHVEPTIRDIPSLLALAPWYGKKHRDNTLTMKRFTNGRGFWCLG
GKAAKNYREKSVDVAGYDELAAFDDDIEQEGSPTFLGDKRIEGSVWPKSIRGSTPKVR
GTCQIERAASESPHFMRFHVACPHCGEEQYLKFGDKETPFGLKWTPDDPSSVFYLCEH
NACVIRQQELDFTDARYICEKTGIWTRDGILWFSSSGEEIEPPDSVTFHIWTAYSPFT
TWVQIVKDWMKTKGDTGKRKTFVNTTLGETWEAKIGERPDAEVMAERKEHYSAPVPDR
VAYLTAGIDSQLDRYEMRVWGWGPGEESWLIDRQIIMGRHDDEQTLLRVDEAINKTYT
RRNGAEMSISRICWDTGGIDPTIVYERSKKHGLFRVIPIKGASVYGKPVASMPRKRNK
NGVYLTEIGTDTAKEQIYNRFTLTPEGDEPLPGAVHFPNNPDIFDLTEAQQLTAEEQV
EKWVDGRKKILWDSKKRRNEALDCFVYALAALRISISRWQLDLSALLASLQEEDGAAT
NKKTLADYARALSGEDE"
gene 2633..2839
/gene="W"
/locus_tag="lambdap03"
/db_xref="GeneID:2703525"
CDS 2633..2839
/gene="W"
/locus_tag="lambdap03"
/codon_start=1
/transl_table=11
/product="head-tail joining protein"
/protein_id="NP_040582.1"
/db_xref="GeneID:2703525"
/translation="MTRQEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLK
KYIAELEVQTGMTQRRRGPAGFYV"
gene 2836..4437
/gene="B"
/locus_tag="lambdap04"
/db_xref="GeneID:2703526"
CDS 2836..4437
/gene="B"
/locus_tag="lambdap04"
/codon_start=1
/transl_table=11
/product="capsid component"
/protein_id="NP_040583.1"
/db_xref="GeneID:2703526"
/translation="MKTPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSES
VDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEE
EARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTS
SSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQK
WTWIPRELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKA
MYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLM
PGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANES
WAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGS
GRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRETMERRAAGLKPP
AWAAAAFESGLRQSTEEEKSDSRAA"
sig_peptide 2836..2901
/gene="B"
/locus_tag="lambdap04"
/product="hypothetical protein"
/note="leader peptide"
mat_peptide 2902..4434
/gene="B"
/locus_tag="lambdap04"
/product="processed B"
/protein_id="NP_955536.1"
gene 4418..5737
/gene="C"
/locus_tag="lambdap05"
/db_xref="GeneID:2703527"
CDS 4418..5737
/gene="C"
/locus_tag="lambdap05"
/codon_start=1
/transl_table=11
/product="capsid component"
/protein_id="NP_040584.1"
/db_xref="GeneID:2703527"
/translation="MTAELRNLPHIASMAFNEPLMLEPAYARVFFCALAGQLGISSLT
DAVSGDSLTAQEALATLALSGDDDGPRQARSYQVMNGIAVLPVSGTLVSRTRALQPYS
GMTGYNGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALA
NDMNCSAGQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHK
VDGNPYSHLPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQVVLDTEAAVYSGQEAID
AGLADELVNSTDAITVMRDALDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPAT
EGENASAAQPDVNAQITAAVAAENSRIMGILNCEEAHGREEQARVLAETPGMTVKTAR
RILAAAPQSAQARSDTALDRLMQGAPAPLAAGNPASDAVNDLLNTPV"
gene 5132..5737
/gene="nu3"
/locus_tag="lambdap06"
/db_xref="GeneID:2703528"
CDS 5132..5737
/gene="nu3"
/locus_tag="lambdap06"
/codon_start=1
/transl_table=11
/product="capsid assembly protein"
/protein_id="NP_040585.1"
/db_xref="GeneID:2703528"
/translation="MDATRQMFAQKVSAYTGLSVQVVLDTEAAVYSGQEAIDAGLADE
LVNSTDAITVMRDALDARKSRLSGGRMTKETQSTTVSATASQADVTDVVPATEGENAS
AAQPDVNAQITAAVAAENSRIMGILNCEEAHGREEQARVLAETPGMTVKTARRILAAA
PQSAQARSDTALDRLMQGAPAPLAAGNPASDAVNDLLNTPV"
gene 5747..6079
/gene="D"
/locus_tag="lambdap07"
/db_xref="GeneID:2703529"
CDS 5747..6079
/gene="D"
/locus_tag="lambdap07"
/codon_start=1
/transl_table=11
/product="head-DNA stabilization protein"
/protein_id="NP_040586.1"
/db_xref="GeneID:2703529"
/translation="MTSKETFTHYQPQGNSDPAHTATAPGGLSAKAPAMTPLMLDTSS
RKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAF
AGTAISIV"
gene 6135..7160
/gene="E"
/locus_tag="lambdap08"
/db_xref="GeneID:2703482"
CDS 6135..7160
/gene="E"
/locus_tag="lambdap08"
/codon_start=1
/transl_table=11
/product="capsid component"
/protein_id="NP_040587.1"
/db_xref="GeneID:2703482"
/translation="MSMYTTAQLLAANEQKFKFDPLFLRLFFRESYPFTTEKVYLSQI
PGLVNMALYVSPIVSGEVIRSRGGSTSEFTPGYVKPKHEVNPQMTLRRLPDEDPQNLA
DPAYRRRRIIMQNMRDEELAIAQVEEMQAVSAVLKGKYTMTGEAFDPVEVDMGRSEEN
NITQSGGTEWSKRDKSTYDPTDDIEAYALNASGVVNIIVFDPKGWALFRSFKAVKEKL
DTRRGSNSELETAVKDLGKAVSYKGMYGDVAIVVYSGQYVENGVKKNFLPDNTMVLGN
TQARGLRTYGCIQDADAQREGINASARYPKNWVTTGDPAREFTMIQSAPLMLLADPDE
FVSVQLA"
gene 7202..7600
/gene="Fi"
/locus_tag="lambdap09"
/db_xref="GeneID:2703483"
CDS 7202..7600
/gene="Fi"
/locus_tag="lambdap09"
/codon_start=1
/transl_table=11
/product="DNA packaging protein"
/protein_id="NP_040588.1"
/db_xref="GeneID:2703483"
/translation="MTKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELDDT
DETAGQDTPLSRENVLTGHENEVGSAQPDTVILDTSELVTVVALVKLHTDALHATRDE
PVAFVLPGTAFRVSAGVAAEMTERGLARMQ"
gene 7612..7965
/gene="Fii"
/locus_tag="lambdap10"
/db_xref="GeneID:2703484"
CDS 7612..7965
/gene="Fii"
/locus_tag="lambdap10"
/codon_start=1
/transl_table=11
/product="head-tail joining protein"
/protein_id="NP_040589.1"
/db_xref="GeneID:2703484"
/translation="MADFDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFD
DPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDTLTIGEENFWVDRVSPDDGGSCH
LWLGRGVPPAVNRRR"
gene 7977..8555
/gene="Z"
/locus_tag="lambdap11"
/db_xref="GeneID:2703485"
CDS 7977..8555
/gene="Z"
/locus_tag="lambdap11"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040590.1"
/db_xref="GeneID:2703485"
/translation="MAIKGLEQAVENLSRISKTAVPGAAAMAINRVASSAISQSASQV
ARETKVRRKLVKERARLKRATVKNPQARIKVNRGDLPVIKLGNARVVLSRRRRRKKGQ
RSSLKGGGSVLVVGNRRIPGAFIQQLKNGRWHVMQRVAGKNRYPIDVVKIPMAVPLTT
AFKQNIERIRRERLPKELGYALQHQLRMVIKR"
gene 8552..8947
/gene="U"
/locus_tag="lambdap12"
/db_xref="GeneID:2703486"
CDS 8552..8947
/gene="U"
/locus_tag="lambdap12"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040591.1"
/db_xref="GeneID:2703486"
/translation="MKHTELRAAVLDALEKHDTGATFFDGRPAVFDEADFPAVAVYLT
GAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDAWMESRIYPVMSDIPALSDLITSM
VASGYDYRRDDDAGLWSSADLTYVITYEM"
gene 8955..9695
/gene="V"
/locus_tag="lambdap13"
/db_xref="GeneID:2703487"
CDS 8955..9695
/gene="V"
/locus_tag="lambdap13"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040592.1"
/db_xref="GeneID:2703487"
/translation="MPVPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKD
LTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNE
GDTRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMAEDRSTVTA
ATGMTVTPASTSVVKGQSTTLTVAFQPEGVTDKSFRAVSADKTKATVSVSGMTITVNG
VAAGKVNIPVVSGNGEFAAVAEITVTAS"
gene 9711..10133
/gene="G"
/locus_tag="lambdap14"
/db_xref="GeneID:2703488"
CDS 9711..10133
/gene="G"
/locus_tag="lambdap14"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040593.1"
/db_xref="GeneID:2703488"
/translation="MFLKTESFEHNGVTVTLSELSALQRIEHLALMKRQAEQAESDSN
RKFTVEDAIRTGAFLVAMSLWHNHPQKTQMPSMNEAVKQIEQEVLTTWPTEAISHAEN
VVYRLSGMYEFVVNNAPEQTEDAGPAEPVSAGKCSTVS"
gene 10115..10549
/gene="T"
/locus_tag="lambdap15"
/db_xref="GeneID:2703489"
CDS 10115..10549
/gene="T"
/locus_tag="lambdap15"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040594.1"
/db_xref="GeneID:2703489"
/translation="MFDGELSFALKLAREMGRPDWRAMLAGMSSTEYADWHRFYSTHY
FHDVLLDMHFSGLTYTVLSLFFSDPDMHPLDFSLLNRREADEEPEDDVLMQKAAGLAG
GVRFGPDGNEVIPASPDVADMTEDDVMLMTVSEGIAGGVRYG"
gene 10542..13103
/gene="H"
/locus_tag="lambdap16"
/db_xref="GeneID:2703511"
CDS 10542..13103
/gene="H"
/locus_tag="lambdap16"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040595.1"
/db_xref="GeneID:2703511"
/translation="MAEPVGDLVVDLSLDAARFDEQMARVRRHFSGTESDAKKTAAVV
EQSLSRQALAAQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSPWLILLQQGGQVKD
SFGGMIPMFRGLAGAITLPMVGATSLAVATGALAYAWYQGNSTLSDFNKTLVLSGNQA
GLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQSVARFSSASGV
EVDKVAEAFGKLTTDPTSGLTAMARQFHNVSAEQIAYVAQLQRSGDEAGALQAANEAA
TKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAEAAYKK
ADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQTQQDKNAQQQSDTEA
SRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEAT
LKKPKQSSVKVSAGDRQEDSAHAALLTLQAELRTLEKHAGANEKISQQRRDLWKAESQ
FAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAALGDKVTYQERLNALAQQADKFA
QQQRAKRAAIDAKSRGLTDRQAEREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDQ
LRGNWMAGLKSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTR
SVLSMMTEILLKQAMVGIVGSIGSAIGGAVGGGASASGGTAIQAAAAKFHFATGGFTG
TGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRSQAS
GTFEQNNHVVINNDGTNGQIGPAALKAVYDMARKGARDEIQTQMRDGGLFSGGGR"
gene 13100..13429
/gene="M"
/locus_tag="lambdap17"
/db_xref="GeneID:2703512"
CDS 13100..13429
/gene="M"
/locus_tag="lambdap17"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040596.1"
/db_xref="GeneID:2703512"
/translation="MKTFRWKVKPGMDVASVPSVRKVRFGDGYSQRAPAGLNANLKTY
SVTLSVPREEATVLESFLEEHGGWKSFLWTPPYEWRQIKVTCAKWSSRVSMLRVEFSA
EFEQVVN"
gene 13429..14127
/gene="L"
/locus_tag="lambdap18"
/db_xref="GeneID:2703513"
CDS 13429..14127
/gene="L"
/locus_tag="lambdap18"
/codon_start=1
/transl_table=11
/product="tail component"
/protein_id="NP_040597.1"
/db_xref="GeneID:2703513"
/translation="MQDIRQETLNECTRAEQSASVVLWEIDLTEVGGERYFFCNEQNE
KGEPVTWQGRQYQPYPIQGSGFELNGKGTSTRPTLTVSNLYGMVTGMAEDMQSLVGGT
VVRRKVYARFLDAVNFVNGNSYADPEQEVISRWRIEQCSELSAVSASFVLSTPTETDG
AVFPGRIMLANTCTWTYRGDECGYSGPAVADEYDQPTSDITKDKCSKCLSGCKFRNNV
GNFGGFLSINKLSQ"
gene 14276..14875
/gene="K"
/locus_tag="lambdap19"
/db_xref="GeneID:2703514"
CDS 14276..14875