Merge pull request #66 from sys-bio/develop

Release 2.13.1

Author: luciansmith

.azurepipelines/getCheck.py

@@ -0,0 +1,85 @@
+"""
+Get check from url.
+
+Usage:
+
+    python getCheck.py <check_download_link> <check_install_prefix?
+
+For example:
+
+    python getcheck.py https://github.com/sys-bio/check-13.x/releases/download/checkorg-13.0.0/check13-ubuntu-gcc10-rel.tar.gz /mnt/d/roadrunner/roadrunner/check-download-test/ubuntu
+
+"""
+
+
+import glob
+import argparse
+import os
+from os.path import join, splitext, isdir, isfile
+import zipfile
+import tarfile
+import requests
+import io
+import shutil
+
+# command line arguments
+parser = argparse.ArgumentParser()
+parser.add_argument("check_download_link", type=str, help="Url to compressed check link to download")
+parser.add_argument("check_install_prefix", type=str, help="Where to install check (directory that will contain bin, include, lib etc")
+args = parser.parse_args()
+
+# filename of downloaded zip, check-[debug|release].zip
+compressed_check_filename = args.check_download_link.split('/')[-1]
+
+# absolute path to compressed_check_filename
+abs_compressed_check_filename = join(args.check_install_prefix, compressed_check_filename)
+
+# e.g. ('check--[debug|release]', '.zip')
+downloaded_check_folder, ext = splitext(compressed_check_filename)
+# when link is tar.gz, get rid of extra .tar
+if ".tar" in downloaded_check_folder:
+    downloaded_check_folder = downloaded_check_folder.replace(".tar", "")
+
+# make install prefix if not exists
+if not isdir(args.check_install_prefix):
+    os.makedirs(args.check_install_prefix)
+
+print("compressed_check_filename".ljust(20), compressed_check_filename)
+print("abs_compressed_check_filename".ljust(20), abs_compressed_check_filename)
+print("downloaded_check_folder".ljust(20), downloaded_check_folder)
+print("args.check_download_link".ljust(20), args.check_download_link)
+print("downloaded_check_folder, ext".ljust(20), downloaded_check_folder, ext)
+
+# we expect a folder called bin in
+abs_downloaded_check_folder = join(args.check_install_prefix, downloaded_check_folder)
+
+# Don't download if we already have it
+if not isdir(join(abs_downloaded_check_folder, "bin")):
+    print("downloading check from {}".format(args.check_download_link))
+    r = requests.get(args.check_download_link, stream=True)
+    if ext == ".zip":
+        z = zipfile.ZipFile(io.BytesIO(r.content))
+        z.extractall(args.check_install_prefix)
+    elif ext == ".gz":
+        z = tarfile.open(fileobj=r.raw, mode="r|gz")
+        z.extractall(args.check_install_prefix)
+    else:
+        raise ValueError("Unsupported extension")
+else :
+    print("Found existing check, not downloading check")
+
+# move from unzip dir to check_install_prefix
+folders = glob.glob(join(abs_downloaded_check_folder, "*"))
+print(folders)
+for f in folders:
+    shutil.move(f, args.check_install_prefix)
+
+
+if isfile(abs_compressed_check_filename):
+    os.remove(abs_compressed_check_filename)
+
+
+
+
+
+

.azurepipelines/getQt.py

@@ -0,0 +1,85 @@
+"""
+Get qt from url.
+
+Usage:
+
+    python getQt.py <qt_download_link> <qt_install_prefix?
+
+For example:
+
+    python getQt.py https://github.com/sys-bio/antimony/releases/download/libcheck/Qt5.15.2.msvc.zip qt
+
+"""
+
+
+import glob
+import argparse
+import os
+from os.path import join, splitext, isdir, isfile
+import zipfile
+import tarfile
+import requests
+import io
+import shutil
+
+# command line arguments
+parser = argparse.ArgumentParser()
+parser.add_argument("qt_download_link", type=str, help="Url to compressed qt link to download")
+parser.add_argument("qt_install_prefix", type=str, help="Where to install qt (directory that will contain bin, include, lib etc")
+args = parser.parse_args()
+
+# filename of downloaded zip, qt-[debug|release].zip
+compressed_qt_filename = args.qt_download_link.split('/')[-1]
+
+# absolute path to compressed_qt_filename
+abs_compressed_qt_filename = join(args.qt_install_prefix, compressed_qt_filename)
+
+# e.g. ('qt--[debug|release]', '.zip')
+downloaded_qt_folder, ext = splitext(compressed_qt_filename)
+# when link is tar.gz, get rid of extra .tar
+if ".tar" in downloaded_qt_folder:
+    downloaded_qt_folder = downloaded_qt_folder.replace(".tar", "")
+
+# make install prefix if not exists
+if not isdir(args.qt_install_prefix):
+    os.makedirs(args.qt_install_prefix)
+
+print("compressed_qt_filename".ljust(20), compressed_qt_filename)
+print("abs_compressed_qt_filename".ljust(20), abs_compressed_qt_filename)
+print("downloaded_qt_folder".ljust(20), downloaded_qt_folder)
+print("args.qt_download_link".ljust(20), args.qt_download_link)
+print("downloaded_qt_folder, ext".ljust(20), downloaded_qt_folder, ext)
+
+# we expect a folder called bin in
+abs_downloaded_qt_folder = join(args.qt_install_prefix, downloaded_qt_folder)
+
+# Don't download if we already have it
+if not isdir(join(abs_downloaded_qt_folder, "5.15.2")):
+    print("downloading qt from {}".format(args.qt_download_link))
+    r = requests.get(args.qt_download_link, stream=True)
+    if ext == ".zip":
+        z = zipfile.ZipFile(io.BytesIO(r.content))
+        z.extractall(args.qt_install_prefix)
+    elif ext == ".gz":
+        z = tarfile.open(fileobj=r.raw, mode="r|gz")
+        z.extractall(args.qt_install_prefix)
+    else:
+        raise ValueError("Unsupported extension")
+else :
+    print("Found existing qt, not downloading qt")
+
+# move from unzip dir to qt_install_prefix
+folders = glob.glob(join(abs_downloaded_qt_folder, "*"))
+print(folders)
+for f in folders:
+    shutil.move(f, args.qt_install_prefix)
+
+
+if isfile(abs_compressed_qt_filename):
+    os.remove(abs_compressed_qt_filename)
+
+
+
+
+
+

.azurepipelines/renameWheel.py

@@ -0,0 +1,34 @@
+"""
+Finds and renames the local Antimony wheel file to work with any Python version.
+
+Usage:
+
+    python renameWheel.py
+
+For example:
+
+    python renameWheel.py
+
+"""
+
+
+from os import walk, rename
+
+wfiles = []
+for __, _, files in walk("."):
+    wfiles += files
+
+for file in wfiles:
+    if ".whl" not in file:
+        continue
+    fvec = file.split("-")
+    fvec[2] = "py3"
+    fvec[3] = "none"
+    if "linux_" in fvec[4]:
+        fvec[4] = fvec[4].replace("linux_", "manylinux2014_")
+    newname = ""
+    for fpart in fvec:
+        newname += "-" + fpart
+    newname = newname[1:]
+    rename(file, newname)
+