Merge pull request #50 from stemangiola/fix-long-assay

Make assay output shorter
stemangiola · Aug 1, 2022 · ba7172b · ba7172b
2 parents 2bc6a5e + 0e0dcc1
commit ba7172b
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diff --git a/README.Rmd b/README.Rmd
@@ -93,7 +93,7 @@ pbmc_small_tidy
 **But it is a SingleCellExperiment object after all**
 
 ```{r}
-assay(pbmc_small_tidy)
+assay(pbmc_small_tidy, "counts")[1:5, 1:5]
 ```
 
 # Annotation polishing

diff --git a/README.md b/README.md
diff --git a/man/figures/pc_plot-1.png b/man/figures/pc_plot-1.png
diff --git a/man/figures/plot2-1.png b/man/figures/plot2-1.png
diff --git a/man/figures/unnamed-chunk-10-1.png b/man/figures/unnamed-chunk-10-1.png
diff --git a/man/figures/unnamed-chunk-15-1.png b/man/figures/unnamed-chunk-15-1.png
diff --git a/man/figures/unnamed-chunk-16-1.png b/man/figures/unnamed-chunk-16-1.png
diff --git a/man/figures/unnamed-chunk-19-1.png b/man/figures/unnamed-chunk-19-1.png
diff --git a/vignettes/introduction.Rmd b/vignettes/introduction.Rmd
@@ -90,7 +90,7 @@ pbmc_small_tidy
 **But it is a SingleCellExperiment object after all**
 
 ```{r}
-assay(pbmc_small_tidy)
+assay(pbmc_small_tidy, "counts")[1:5, 1:5]
 ```
 
 # Annotation polishing