DESCRIPTION

Type: Package
Package: tidySingleCellExperiment
Title: Brings SingleCellExperiment to the Tidyverse 
Version: 1.15.5
Authors@R: c(person("Stefano", "Mangiola", 
    comment=c(ORCID="0000-0001-7474-836X"),
    email="mangiolastefano@gmail.com",
    role=c("aut", "cre"))) 
Description: 'tidySingleCellExperiment' is an adapter that abstracts
    the 'SingleCellExperiment' container in the form of a 'tibble'.
    This allows *tidy* data manipulation, nesting, and plotting.
    For example, a 'tidySingleCellExperiment' is directly compatible
    with functions from 'tidyverse' packages `dplyr` and `tidyr`,
    as well as plotting with `ggplot2` and `plotly`.
    In addition, the package provides various utility
    functions specific to single-cell omics data analysis
    (e.g., aggregation of cell-level data to pseudobulks).
License: GPL-3
Depends:
    R (>= 4.4.0),
    SingleCellExperiment
Imports:
    dplyr, 
    tidyr, 
    ttservice (>= 0.4.0),
    SummarizedExperiment,
    tibble,
    ggplot2,
    magrittr,
    rlang,
    purrr,
    pkgconfig,
    lifecycle,
    methods,
    utils,
    S4Vectors,
    tidyselect,
    ellipsis,
    vctrs,
    pillar,
    stringr,
    cli,
    fansi,
    Matrix,
    stats
Suggests:
    BiocStyle,
    testthat,
    knitr,
    markdown,
    rmarkdown,
    SingleCellSignalR,
    SingleR,
    scater,
    scran,
    tidyHeatmap,
    igraph,
    GGally,
    uwot,
    celldex,
    dittoSeq,
    plotly
VignetteBuilder: 
    knitr
RdMacros:
    lifecycle
Biarch: true
biocViews: 
    AssayDomain, Infrastructure, RNASeq, DifferentialExpression, SingleCell,
    GeneExpression, Normalization, Clustering, QualityControl, Sequencing
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/stemangiola/tidySingleCellExperiment
BugReports: https://github.com/stemangiola/tidySingleCellExperiment/issues