SPM12 r6470

Author: SPMcentral

@file_array/private/init.c

@@ -1,29 +1,37 @@
 /*
- * $Id: init.c 6076 2014-06-30 13:41:11Z guillaume $
+ * $Id: init.c 6428 2015-05-06 14:09:04Z guillaume $
  * Guillaume Flandin
  */
 
 #ifndef MATLAB_MEX_FILE
-#undef  _LARGEFILE64_SOURCE
-#define _LARGEFILE64_SOURCE
-#include <stdio.h>
-#include <sys/stat.h>
-#define structStat struct stat64
-#define getFileFstat fstat64
-#define getFilePos fgetpos64
-#define setFilePos fsetpos64
-#define fpos_T fpos64_t
+# undef  _LARGEFILE64_SOURCE
+# define _LARGEFILE64_SOURCE
+# include <stdio.h>
+# include <sys/stat.h>
+# if defined(__APPLE__)
+#  define structStat struct stat
+#  define getFileFstat fstat
+#  define getFilePos fgetpos
+#  define setFilePos fsetpos
+#  define fpos_T fpos_t
+# else
+#  define structStat struct stat64
+#  define getFileFstat fstat64
+#  define getFilePos fgetpos64
+#  define setFilePos fsetpos64
+#  define fpos_T fpos64_t
+# endif
 #else
-#include "io64.h"
+# include "io64.h"
 #endif
 #include "mex.h"
 #ifdef SPM_WIN32
-#include <io.h>
-#define snprintf _snprintf
-#define ftruncate _chsize_s
+# include <io.h>
+# define snprintf _snprintf
+# define ftruncate _chsize_s
 #else
-#include <unistd.h>
-#include <sys/types.h>
+# include <unistd.h>
+# include <sys/types.h>
 #endif
 
 

@gifti/Contents.m

@@ -8,21 +8,21 @@
 % This MATLAB class is part of SPM:
 %                  http://www.fil.ion.ucl.ac.uk/spm/
 %
-% It relies on external MATLAB code:
+% It relies on external libraries:
 %   Base64, by Peter J. Acklam:
 %      http://home.online.no/~pjacklam/
-%   dzip, by Michael Kleder:
-%      http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=8899
+%   miniz, by Rich Geldreich:
+%      http://code.google.com/p/miniz/
 %   XMLTree, by Guillaume Flandin:
 %      http://www.artefact.tk/software/matlab/xml/
 %__________________________________________________________________________
-% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
+% Copyright (C) 2008-2015 Wellcome Trust Centre for Neuroimaging
 
 % Guillaume Flandin
-% $Id: Contents.m 2076 2008-09-10 12:34:08Z guillaume $
+% $Id: Contents.m 6404 2015-04-13 14:29:53Z guillaume $
 
 % GIfTI file format for MATLAB (The Mathworks, Inc.).
-% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
+% Copyright (C) 2008-2015 Wellcome Trust Centre for Neuroimaging
 %
 % This program is free software; you can redistribute it and/or
 % modify it under the terms of the GNU General Public License

@gifti/export.m

@@ -2,17 +2,17 @@
 % Export a GIfTI object into specific MATLAB struct
 % FORMAT s = export(this,target)
 % this   - GIfTI object
-% target - string describing target output [default: Matlab]
+% target - string describing target output [default: MATLAB]
 % s      - a structure containing public fields of the object
 %__________________________________________________________________________
 % Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
 
 % Guillaume Flandin
-% $Id: export.m 5160 2012-12-21 16:58:38Z guillaume $
+% $Id: export.m 6401 2015-04-09 17:21:33Z guillaume $
 
 if numel(this) > 1, warning('Only handle scalar objects yet.'); end
 
-if nargin <= 1, target = 'Matlab'; end
+if nargin <= 1, target = 'MATLAB'; end
 
 switch lower(target)
     case 'matlab'

@gifti/fieldnames.m

@@ -7,10 +7,10 @@
 % Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
 
 % Guillaume Flandin
-% $Id: fieldnames.m 5608 2013-08-13 15:13:19Z guillaume $
+% $Id: fieldnames.m 6345 2015-02-20 12:25:50Z guillaume $
 
 if numel(this) > 1, warning('Only handle scalar objects yet.'); end
 
-pfn = {'vertices' 'faces' 'normals' 'cdata' 'mat' 'labels'};
+pfn = {'vertices' 'faces' 'normals' 'cdata' 'mat' 'labels' 'indices'};
 
 names = pfn(isintent(this,pfn));

@gifti/gifti.m

@@ -8,7 +8,7 @@
 % Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
 
 % Guillaume Flandin
-% $Id: gifti.m 5322 2013-03-13 15:04:14Z guillaume $
+% $Id: gifti.m 6347 2015-02-24 17:59:16Z guillaume $
 
 switch nargin
 
@@ -21,8 +21,8 @@
             this = varargin{1};
 
         elseif isstruct(varargin{1})
-            f       = {'faces', 'face', 'tri' 'vertices', 'vert', 'pnt', 'cdata'};
-            ff      = {'faces', 'faces', 'faces', 'vertices', 'vertices', 'vertices', 'cdata'};
+            f       = {'faces', 'face', 'tri' 'vertices', 'vert', 'pnt', 'cdata', 'indices'};
+            ff      = {'faces', 'faces', 'faces', 'vertices', 'vertices', 'vertices', 'cdata', 'indices'};
             [c, ia] = intersect(f,fieldnames(varargin{1}));
             if ~isempty(c)
                 this = gifti;

@gifti/private/Makefile

@@ -0,0 +1,34 @@
+#!/usr/bin/env make -f
+# GIfTI Makefile called by {SPM}/src/Makefile
+#
+# Copyright (C) 2015 Wellcome Trust Centre for Neuroimaging
+#
+# $Id: Makefile 6402 2015-04-09 18:11:06Z guillaume $
+
+include ../../src/Makefile.var
+
+SPMMEX = zstream.$(SUF)
+
+ifeq (mex,$(SUF))
+	export CFLAGS = $(shell $(MEX) -p CFLAGS) -std=c99
+else
+	MEXOPTS += CFLAGS='$$CFLAGS -std=c99'
+endif
+
+all: $(SPMMEX)
+	@:
+
+clean:
+	@:
+        
+distclean: clean
+	$(DEL) $(SPMMEX)
+
+install:
+	@:
+
+tarball: all
+	$(TAR) cf spm_mex.tar $(SPMMEX)
+
+%.$(SUF) : %.c
+	$(MEX) $< $(MEXEND)

@gifti/private/dunzip.m

@@ -9,7 +9,7 @@
 % Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
 
 % Guillaume Flandin
-% $Id: isintent.m 5608 2013-08-13 15:13:19Z guillaume $
+% $Id: isintent.m 6345 2015-02-20 12:25:50Z guillaume $
 
 a = [];
 b = [];
@@ -39,6 +39,12 @@
                 a(end+1) = loc;
                 b(end+1) = i;
             end
+        case 'NODE_INDEX'
+            [tf, loc] = ismember('indices',intent);
+            if tf
+                a(end+1) = loc;
+                b(end+1) = i;
+            end
         case cdata
             [tf, loc] = ismember('cdata',intent);
             if tf
@@ -101,7 +107,6 @@
 'TIME_SERIES'
 'RGB_VECTOR'
 'RGBA_VECTOR'
-'NODE_INDEX'
 'SHAPE'
 'CONNECTIVITY_DENSE'
 'CONNECTIVITY_DENSE_TIME'