Add LICENSE and license comments

Author: taldcroft

LICENSE.rst

@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2017, Smithsonian Astrophysical Observatory
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

alt_core/core_python.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import numpy as np
 
 def calc_model(indexes, dt, n_preds, mvals, parvals, mults, heats, heatsinks):

doc/conf.py

@@ -11,6 +11,7 @@
 #
 # All configuration values have a default; values that are commented out
 # serve to show the default.
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 
 import sys
 import os

examples/doc/example1.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Example with a single node (ACA CCD temperature) with solar heating
 (2 bins).

examples/doc/example2.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Example with a single node (ACA CCD temperature) with solar heating
 (2 bins) and a heat sink.

examples/doc/example3.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Example with a single node (ACA CCD temperature) with solar heating
 (2 bins) and a heat sink.

examples/doc/example3_fit.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import sys
 import xija
 

examples/doc/example4.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import sys
 import xija
 

examples/dpa/plot_dpa_resid.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import xija
 import numpy as np
 import matplotlib.pyplot as plt

fit.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 
 import os
 import sys

gui_fit.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Run the gui_fit tool
 """

models/acisfp/calc_model.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """Sample code for calculating the ACIS FP Xija model.
 
 This shows necessary inputs and runs without using the eng archive.

models/minusz/make_minusz.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Replicate (mostly) the minusz TEPHIN node model.  (dPs set to zero though).
 

models/psmc/make_psmc_from_twodof.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import xija
 import numpy as np
 import asciitable

setup.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 from setuptools import setup, Extension
 import os
 from xija import __version__

tests_no_pytest/test_minimal_onedof.py

@@ -1,5 +1,6 @@
 # Build the core.so module and put into the source directory.
 # python setup.py build_ext --inplace
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 
 import xija
 

tests_no_pytest/test_minimal_twodof.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import numpy as np
 import xija
 

tests_no_pytest/test_minusz.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Replicate (mostly) the minusz TEPHIN node model.  (dPs set to zero though).
 """

tests_no_pytest/test_minusz_proto.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Replicate (mostly) the minusz TEPHIN node model.  (dPs set to zero though).
 """

tests_no_pytest/test_write.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import os
 import json
 import numpy as np

worker.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Worker
 """

xija/__init__.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 from .model import *
 from .component import *
 from .files import files

xija/clogging.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import logging
 from logging import DEBUG, INFO, WARNING, CRITICAL, ERROR
 import sys

xija/component/__init__.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 from .base import *
 from .mask import *
 from .heat import *

xija/component/base.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import numpy as np
 import six
 

xija/component/experimental.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import numpy as np
 
 try:

xija/component/heat.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 from __future__ import print_function
 
 import re

xija/component/mask.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 import operator
 
 import numpy as np

xija/convert.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 from __future__ import print_function
 
 import sys

xija/files.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 files = dict(model_spec =   '{{src.model}}/{{src.model}}',
              out_dir  =     '{{src.model}}/{{src.outdir}}',
              out_values =   '{{src.model}}/{{src.outdir}}/values',

xija/gui_fit.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 
 from __future__ import print_function
 

xija/model.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 """
 Xija - framework to model complex time-series data using a network of
 coupled nodes with pluggable model components that define the node

xija/tests/test_models.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 from __future__ import print_function
 
 import os

xija/tmal.py

@@ -1,3 +1,4 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
 OPCODES = {'coupling': 0,
            'heatsink': 1,
            'precomputed_heat': 2,