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dxR: DNAnexus R API

API Documentation

Build dependencies

Building and installing

You should install the RCurl and RJSONIO packages if you have not already. You can do so by running the following commands from within R.

> install.packages("RCurl")
> install.packages("RJSONIO")

Next, run the following command from the command-line (outside of R) to install the package from source.

R CMD INSTALL dx-toolkit/src/R/dxR

You can use the -l flag to specify a local directory in which to install the package if you do not have system permissions to install it for all users. If taking such an approach, you should set your R_LIBS environment variable appropriately if you have not already.

export R_LIBS='/home/username/path/to/dest/library'
R CMD INSTALL dx-toolkit/src/R/dxR -l $R_LIBS

Using the package

Once you have installed the library, you are ready to use it. Inside R, just run:

library(dxR)