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Extra line in annotated database #4

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eggrandio opened this issue Feb 12, 2025 · 0 comments
Open

Extra line in annotated database #4

eggrandio opened this issue Feb 12, 2025 · 0 comments

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@eggrandio
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Hello,

I have managed to use transannot 3.0 conda version to annotate a protein set with Pfam, Swiss-prot and EggNOGG.

In the final database, there is an extra line at the end of the file:
query target qstart qend theader evalue pident bits seq-seq search SwissProt

I was wondering if it is just a formatting error (and I can just delete it) or if that could mean that some data is missing.

Here are the commands I have run:

transannot downloaddb eggNOG transannotdb/eggNOGDB transannotdb/tmp/
transannot downloaddb Pfam-A.full transannotdb/PfamDB transannotdb/tmp/
transannot downloaddb UniProtKB/Swiss-Prot transannotdb/swissprotDB transannotdb/tmp/

transannot createquerydb ./custom_longest_orf.pep ./transannot/custom_gtf_db/custom_gtf_db ./transannot/custom_gtf_tmp --remove-tmp-files

transannot annotate ./transannot/custom_gtf_db/custom_gtf_db \
    ./transannotdb/PfamDB \
    ./transannotdb/eggNOGDB \
    ./transannotdb/swissprotDB \
    ./transannot/custom_gtf_annotated_db/custom_gtf_annotated_db \
    ./transannot/tmp \
    --no-run-clust --remove-tmp-files
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