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15:01:57.162 ERROR: could not open file uniclust30_2016_09_cs219.ffdata' #380

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minhphi1712 opened this issue Jan 23, 2025 · 0 comments

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@minhphi1712
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hhblits -i /home/sandhyap/2CX7 -d /home/sandhyap/programs/databases/uniclust30_2016_09 -oa3m query1.a3m -n 1

- 14:55:22.971 INFO: Search results will be written to /home/sandhyap/2CX7.hhr

- 14:55:22.971 ERROR: In /home/sandhyap/programs/hh-suite/src/ffindexdatabase.cpp:11: FFindexDatabase:

- 14:55:22.971 ERROR: 	could not open file '/home/sandhyap/programs/databases/uniclust30_2016_09_cs219.ffdata'

I cheked the permission.

lrwxrwxrwx 1 sandhyap sandhyap          29 Feb  1  2017 uniclust30_2016_09_a3m_db -> uniclust30_2016_09_a3m.ffdata
-rwxrwxrwx 1 sandhyap sandhyap   293264904 Feb  1  2017 uniclust30_2016_09_a3m_db.index
-rwxrwxrwx 1 sandhyap sandhyap 37485951912 Feb  1  2017 uniclust30_2016_09_a3m.ffdata
-rwxrwxrwx 1 sandhyap sandhyap   251739828 Feb  1  2017 uniclust30_2016_09_a3m.ffindex
-rwxrwxrwx 1 sandhyap sandhyap  2879944163 Feb  1  2017 uniclust30_2016_09.cs219
-rwxrwxrwx 1 sandhyap sandhyap  2756317415 Feb  1  2017 uniclust30_2016_09_cs219.ffdata
-rwxrwxrwx 1 sandhyap sandhyap   239706919 Feb  1  2017 uniclust30_2016_09_cs219.ffindex
-rwxrwxrwx 1 sandhyap sandhyap          19 Feb  1  2017 uniclust30_2016_09.cs219.sizes
lrwxrwxrwx 1 sandhyap sandhyap          29 Feb  1  2017 uniclust30_2016_09_hhm_db -> uniclust30_2016_09_hhm.ffdata
-rwxrwxrwx 1 sandhyap sandhyap     5262389 Feb  1  2017 uniclust30_2016_09_hhm_db.index
-rwxrwxrwx 1 sandhyap sandhyap  7922155392 Feb  1  2017 uniclust30_2016_09_hhm.ffdata
-rwxrwxrwx 1 sandhyap sandhyap     4547125 Feb  1  2017 uniclust30_2016_09_hhm.ffindex
-rwxrwxrwx 1 sandhyap sandhyap         767 Feb  1  2017 uniclust30_2016_09_md5sum

AFter that i followed
https://github.com/soedinglab/hh-suite/wiki#why-do-i-get-a-segmentation-fault-when-calling-hhblits-on-our-new-machine
hhblits -i /home/sandhyap/2CX7 -d /home/sandhyap/programs/databases/uniclust30_2016_09 -oa3m query1.a3m -n 1 -cpu 1 -maxmem 1

Architecture:          x86_64
CPU op-mode(s):        32-bit, 64-bit
Byte Order:            Little Endian
CPU(s):                40
On-line CPU(s) list:   0-39
Thread(s) per core:    1
Core(s) per socket:    20
Socket(s):             2
NUMA node(s):          2
Vendor ID:             GenuineIntel
CPU family:            6
Model:                 85
Model name:            Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz
Stepping:              7
CPU MHz:               1989.288
CPU max MHz:           3900.0000
CPU min MHz:           1000.0000
BogoMIPS:              5000.00
Virtualization:        VT-x
L1d cache:             32K
L1i cache:             32K
L2 cache:              1024K
L3 cache:              28160K
NUMA node0 CPU(s):     0-19
NUMA node1 CPU(s):     20-39

How can i solve this problem ?

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