diff --git a/data/workflow/databases.sh b/data/workflow/databases.sh index 3559957ee..764093f2b 100644 --- a/data/workflow/databases.sh +++ b/data/workflow/databases.sh @@ -139,7 +139,7 @@ case "${SELECTION}" in downloadFile "https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/VERSION" "${TMP_PATH}/version" downloadFile "https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/genomic_files_reps/gtdb_proteins_aa_reps.tar.gz" "${TMP_PATH}/gtdb.tar.gz" downloadFile "https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/bac120_taxonomy.tsv" "${TMP_PATH}/bac120_taxonomy.tsv" - downloadFile "https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/ar122_taxonomy.tsv" "${TMP_PATH}/ar122_taxonomy.tsv" + downloadFile "https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/ar53_taxonomy.tsv" "${TMP_PATH}/ar53_taxonomy.tsv" touch "${TMP_PATH}/download.done" fi INPUT_TYPE="GTDB" @@ -460,7 +460,7 @@ if [ -n "${TAXONOMY}" ] && notExists "${OUTDB}_mapping"; then printf("%s\t%s\n", $1, ids[$NF]) > taxdir"/mapping_genomes"; }' mkdir -p "${TMP_PATH}/taxonomy" - awk -v taxdir="${TMP_PATH}/taxonomy" "$CMD" "${TMP_PATH}/bac120_taxonomy.tsv" "${TMP_PATH}/ar122_taxonomy.tsv" + awk -v taxdir="${TMP_PATH}/taxonomy" "$CMD" "${TMP_PATH}/bac120_taxonomy.tsv" "${TMP_PATH}/ar53_taxonomy.tsv" touch "${TMP_PATH}/taxonomy/merged.dmp" touch "${TMP_PATH}/taxonomy/delnodes.dmp" # shellcheck disable=SC2086