From 03f0bcca33a6af3135082957f1cebf8baff7cc61 Mon Sep 17 00:00:00 2001
From: Martin Steinegger <themartinsteinegger@gmail.com>
Date: Sun, 18 Jun 2023 19:27:14 +0900
Subject: [PATCH] Remove TestIndexTable

---
 src/test/CMakeLists.txt     |  1 -
 src/test/TestIndexTable.cpp | 37 -------------------------------------
 2 files changed, 38 deletions(-)
 delete mode 100644 src/test/TestIndexTable.cpp

diff --git a/src/test/CMakeLists.txt b/src/test/CMakeLists.txt
index 6d100c4dd..518e89b62 100644
--- a/src/test/CMakeLists.txt
+++ b/src/test/CMakeLists.txt
@@ -13,7 +13,6 @@ set(TESTS
         TestDBReaderIndexSerialization.cpp
         TestDiagonalScoring.cpp
         TestDiagonalScoringPerformance.cpp
-        TestIndexTable.cpp
         TestKmerGenerator.cpp
         TestKmerNucl.cpp
         TestKmerScore.cpp
diff --git a/src/test/TestIndexTable.cpp b/src/test/TestIndexTable.cpp
deleted file mode 100644
index 92e316043..000000000
--- a/src/test/TestIndexTable.cpp
+++ /dev/null
@@ -1,37 +0,0 @@
-//
-// Written by Maria Hauser mhauser@genzentrum.lmu.de
-//
-// Test class for k-mer generation and index table testing.
-//
-
-#include <cstdio>
-#include <iostream>
-#include "SubstitutionMatrix.h"
-#include "IndexTable.h"
-#include "IndexBuilder.h"
-#include "Parameters.h"
-
-const char* binary_name = "test_indextable";
-
-int main (int, const char**) {
-    Parameters &par = Parameters::getInstance();
-    SubstitutionMatrix subMat(par.scoringMatrixFile.values.aminoacid().c_str(), 8.0, -0.2f);
-    DBReader<unsigned int> dbr(
-                               "/Users/mad/Documents/databases/db_small/db_small",
-//                               "/Users/mad/Documents/databases/mmseqs_benchmark/benchmarks/protein_search_uniscop/db/mmseqs/db_sw",
-                               "/Users/mad/Documents/databases/db_small/db_small.index"
-//                               "/Users/mad/Documents/databases/mmseqs_benchmark/benchmarks/protein_search_uniscop/db/mmseqs/db_sw.index"
-                               , 1, 0);
-    dbr.open(DBReader<unsigned int>::LINEAR_ACCCESS);
-
-    Sequence *s = new Sequence(32000, Parameters::DBTYPE_AMINO_ACIDS, &subMat, 6, true, false);
-    IndexTable t(subMat.alphabetSize, 6, false);
-    IndexBuilder::fillDatabase(&t, NULL, NULL, subMat, s, &dbr, 0, dbr.getSize(), 0, 1, 1,0.9);
-    t.printStatistics(subMat.num2aa);
-
-    delete s;
-    dbr.close();
-
-    return 0;
-}
-