diff --git a/resources/report-table-formatter.js b/resources/report-table-formatter.js
deleted file mode 100644
index 8104024d..00000000
--- a/resources/report-table-formatter.js
+++ /dev/null
@@ -1,59 +0,0 @@
-{
-    "breakpoint_seq": function format(value) {
-        var primer_blast_url = `https://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi?LINK_LOC=bookmark&INPUT_SEQUENCE=${value}&PRIMER5_END=900&PRIMER3_START=1100&PRIMER_PRODUCT_MIN=200&PRIMER_PRODUCT_MAX=1200&ORGANISM=Homo%20sapiens&NEWWIN=on&NEWWIN=on&SHOW_SVIEWER=true`;
-        var seq = "…" + value.substring(value.length / 2 - 10, value.length / 2 + 10) + "…";
-        var link = `<a data-toggle="tooltip" data-placement="top" title="primer-blast" href="${primer_blast_url}">${seq}</a>`;
-        return link;
-    },
-    "EVENT": function format(value) {
-        var filename = value.replace("_circle_", "_");
-        var link = `<a data-toggle="tooltip" data-placement="top" title="QC plot" href='../qc_plots/${filename}.html' target='_blank'>${value}</a>`;
-        return link;
-    },
-    "GENES": function format(value) {
-        $(function () {
-            $('[data-toggle="tooltip"]').tooltip()
-        });
-            let genes = value.split(";");
-            let rows = "";
-            for (let g of genes) {
-                rows = `${rows}<tr><td><a data-toggle="tooltip" title="Linkout to genecards" href="https://www.genecards.org/cgi-bin/carddisp.pl?gene=${g}" target="_blank">${g}</a></td></tr>`;
-            };
-            let table = `<div style="overflow-y: auto; max-height: 30vh; min-width: 140px;"><table class="table"><thead><tr><th scope="col">Genes</th></tr></thead><tbody>${rows}</tbody></table></div>`;
-            let button = `<a href='#' tabindex='0' class='btn btn-primary' role='button' data-toggle='popover' data-placement="left" data-trigger='focus' data-html='true' data-content='${table}'><svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-table" viewBox="0 0 16 16">
-    <path d="M0 2a2 2 0 0 1 2-2h12a2 2 0 0 1 2 2v12a2 2 0 0 1-2 2H2a2 2 0 0 1-2-2V2zm15 2h-4v3h4V4zm0 4h-4v3h4V8zm0 4h-4v3h3a1 1 0 0 0 1-1v-2zm-5 3v-3H6v3h4zm-5 0v-3H1v2a1 1 0 0 0 1 1h3zm-4-4h4V8H1v3zm0-4h4V4H1v3zm5-3v3h4V4H6zm4 4H6v3h4V8z"/>
-</svg></a>`;
-            return button;
-    },
-    "gene_helper": function format(value) {
-        $(function () {
-            $('[data-toggle="tooltip"]').tooltip()
-        });
-            let genes = value.split(";");
-            let rows = "";
-            for (let g of genes) {
-                rows = `${rows}<tr><td><a data-toggle="tooltip" title="Linkout to genecards" href="https://www.genecards.org/cgi-bin/carddisp.pl?gene=${g}" target="_blank">${g}</a></td></tr>`;
-            };
-            let table = `<div style="overflow-y: auto; max-height: 30vh; min-width: 140px;"><table class="table"><thead><tr><th scope="col">Genes</th></tr></thead><tbody>${rows}</tbody></table></div>`;
-            let button = `<a href='#' tabindex='0' class='btn btn-primary' role='button' data-toggle='popover' data-placement="left" data-trigger='focus' data-html='true' data-content='${table}'><svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-table" viewBox="0 0 16 16">
-    <path d="M0 2a2 2 0 0 1 2-2h12a2 2 0 0 1 2 2v12a2 2 0 0 1-2 2H2a2 2 0 0 1-2-2V2zm15 2h-4v3h4V4zm0 4h-4v3h4V8zm0 4h-4v3h3a1 1 0 0 0 1-1v-2zm-5 3v-3H6v3h4zm-5 0v-3H1v2a1 1 0 0 0 1 1h3zm-4-4h4V8H1v3zm0-4h4V4H1v3zm5-3v3h4V4H6zm4 4H6v3h4V8z"/>
-</svg></a>`;
-            return button;
-    },
-    "GENES": function format(value) {
-        return this["gene_helper"](value);
-    },
-    "GENES_1": function format(value) {
-        return this["gene_helper"](value);
-    },
-    "GENES_2": function format(value) {
-        return this["gene_helper"](value);
-    },
-    "GENES_3": function format(value) {
-        return this["gene_helper"](value);
-    },
-    "GENES_4": function format(value) {
-        return this["gene_helper"](value);
-    },
-}
-
diff --git a/resources/scenarios/illumina_circle_scenario.yaml b/workflow/resources/scenarios/illumina_circle_scenario.yaml
similarity index 100%
rename from resources/scenarios/illumina_circle_scenario.yaml
rename to workflow/resources/scenarios/illumina_circle_scenario.yaml
diff --git a/resources/scenarios/nanopore_circle_scenario.yaml b/workflow/resources/scenarios/nanopore_circle_scenario.yaml
similarity index 100%
rename from resources/scenarios/nanopore_circle_scenario.yaml
rename to workflow/resources/scenarios/nanopore_circle_scenario.yaml
diff --git a/resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml b/workflow/resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml
similarity index 100%
rename from resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml
rename to workflow/resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
index 2c32dcde..5ba61120 100644
--- a/workflow/rules/common.smk
+++ b/workflow/rules/common.smk
@@ -175,11 +175,17 @@ def scenario_name(wildcards):
 def get_scenario(wildcards):
     scenario = scenario_name(wildcards)
     if scenario == "nanopore_only":
-        return "resources/scenarios/nanopore_circle_scenario.yaml"
+        return workflow.source_path(
+            "../resources/scenarios/nanopore_circle_scenario.yaml"
+        )
     elif scenario == "illumina_only":
-        return "resources/scenarios/illumina_circle_scenario.yaml"
+        return workflow.source_path(
+            "../resources/scenarios/illumina_circle_scenario.yaml"
+        )
     elif scenario == "nanopore_with_illumina_support":
-        return "resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml"
+        return workflow.source_path(
+            "../resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml"
+        )
     else:
         raise ValueError(f"Unknown scenario: {scenario}")