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Variant analysis query error #2

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ianzavitz opened this issue Jul 29, 2019 · 0 comments
Open

Variant analysis query error #2

ianzavitz opened this issue Jul 29, 2019 · 0 comments

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@ianzavitz
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When trying to run a variant analysis query on the example vcf file, it gives me the following error:

ERROR: computation could not be submitted.

I am not sure why I'm getting this error? Something may be messing up with mysql. Here's the docker logs output for the container:

2019-07-29 14:25:51,211 CRIT Supervisor running as root (no user in config file)
2019-07-29 14:25:51,211 WARN Included extra file "/etc/supervisor/conf.d/supervisord-mysqld.conf" during parsing
2019-07-29 14:25:51,211 WARN Included extra file "/etc/supervisor/conf.d/supervisord-tomcat.conf" during parsing
2019-07-29 14:25:51,221 INFO RPC interface 'supervisor' initialized
2019-07-29 14:25:51,221 CRIT Server 'unix_http_server' running without any HTTP authentication checking
2019-07-29 14:25:51,221 INFO supervisord started with pid 1
2019-07-29 14:25:52,228 INFO spawned: 'mysqld' with pid 9
2019-07-29 14:25:52,230 INFO spawned: 'tomcat' with pid 10
2019-07-29 14:25:52,408 INFO exited: mysqld (exit status 1; not expected)
2019-07-29 14:25:53,243 INFO success: tomcat entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
2019-07-29 14:25:53,767 INFO spawned: 'mysqld' with pid 352
2019-07-29 14:25:53,960 INFO exited: mysqld (exit status 1; not expected)
2019-07-29 14:25:56,188 INFO spawned: 'mysqld' with pid 669
2019-07-29 14:25:56,446 INFO exited: mysqld (exit status 1; not expected)
2019-07-29 14:26:00,412 INFO spawned: 'mysqld' with pid 994
2019-07-29 14:26:00,641 INFO exited: mysqld (exit status 1; not expected)
2019-07-29 14:26:01,643 INFO gave up: mysqld entered FATAL state, too many start retries too quickly

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