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Bump version: 2.1.2.9001 → 2.1.2.9002
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.bumpversion.toml

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[tool.bumpversion]
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current_version = "2.1.2.9001"
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current_version = "2.1.2.9002"
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search = "{current_version}"
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replace = "{new_version}"
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message = "Bump version: {current_version} → {new_version}"

.github/workflows/build_conda_recipes.yaml

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recipe_path: conda/recipe
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env_yml_path: conda/env/yml
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env_lock_path: conda/env/lock
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VERSION: '2.1.2.9001' # versioned by bump2version
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VERSION: '2.1.2.9002' # versioned by bump2version
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jobs:
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build_pcgrr_conda_pkg:
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# When merging to one of the branches above and the commit message matches

conda/env/yml/pcgr.yml

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- conda-forge
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dependencies:
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- pcgr::pcgr ==2.1.2.9001 # versioned by bump2version
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- pcgr::pcgr ==2.1.2.9002 # versioned by bump2version
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- bedtools
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- bcftools
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- cyvcf2

conda/env/yml/pcgrr.yml

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dependencies:
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- python
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- pcgr::r-pcgrr ==2.1.2.9001 # versioned by bump2version
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- pcgr::r-pcgrr ==2.1.2.9002 # versioned by bump2version
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- pcgr::r-cpsr
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- r-argparse
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- bioconductor-bsgenome.hsapiens.ucsc.hg38

conda/env/yml/pkgdown.yml

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- bioconda
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- conda-forge
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dependencies:
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- pcgr::r-pcgrr ==2.1.2.9001 # versioned by bump2version
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- pcgr::r-pcgrr ==2.1.2.9002 # versioned by bump2version
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- r-pkgdown
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- r-readr
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- r-glue

conda/recipe/pcgr/meta.yaml

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package:
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name: pcgr
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version: 2.1.2.9001 # versioned by bump2version
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version: 2.1.2.9002 # versioned by bump2version
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source:
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path: ../../..

conda/recipe/pcgrr/meta.yaml

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package:
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name: r-pcgrr
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version: 2.1.2.9001 # versioned by bump2version
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version: 2.1.2.9002 # versioned by bump2version
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source:
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path: ../../../pcgrr

pcgr/_version.py

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# versioned by bump2version
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__version__ = '2.1.2.9001'
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__version__ = '2.1.2.9002'

pcgrr/DESCRIPTION

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Package: pcgrr
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Type: Package
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Title: Personal Cancer Genome ReporteR
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Version: 2.1.2.9001
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Version: 2.1.2.9002
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Authors@R:
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c(person(given = "Sigve",
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family = "Nakken",

pcgrr/vignettes/installation.Rmd

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```{r vars, echo=FALSE}
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Sys.setenv(VEP_VERSION = "113")
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Sys.setenv(PCGR_VERSION = "2.1.2.9001")
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Sys.setenv(PCGR_VERSION = "2.1.2.9002")
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Sys.setenv(BUNDLE_VERSION = "20250217")
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VEP_VERSION <- Sys.getenv("VEP_VERSION")
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PCGR_VERSION <- Sys.getenv("PCGR_VERSION")

pyproject.toml

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[project]
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name = "pcgr"
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version = "2.1.2.9001" # versioned by bump2version
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version = "2.1.2.9002" # versioned by bump2version
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description = "Personal Cancer Genome Reporter (PCGR) - variant interpretation for precision cancer medicine"
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authors = [
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{name = "Sigve Nakken", email = "[email protected]"},

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