diff --git a/.github/workflows/doxygen.yml b/.github/workflows/doxygen.yml
index 10a1465192a..e2265d1b83b 100644
--- a/.github/workflows/doxygen.yml
+++ b/.github/workflows/doxygen.yml
@@ -4,6 +4,7 @@ on:
   push:
     branches:
       - develop
+      - doxygen
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
diff --git a/bin/ci/README.md b/bin/ci/README.md
index 36d4fc1d310..32ae24b3a20 100644
--- a/bin/ci/README.md
+++ b/bin/ci/README.md
@@ -1,3 +1,5 @@
+# Continuous Integration (CI) Scripts
+
 In this directory are two scripts, `build.sh` and `test.sh` used for building
 and testing rippled.
 
diff --git a/cmake/RippledDocs.cmake b/cmake/RippledDocs.cmake
index a9b8b283bf0..d93bc119c0d 100644
--- a/cmake/RippledDocs.cmake
+++ b/cmake/RippledDocs.cmake
@@ -21,15 +21,17 @@ set(doxyfile "${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile")
 
 file(GLOB_RECURSE doxygen_input
   docs/*.md
-  src/ripple/*.h
-  src/ripple/*.cpp
-  src/ripple/*.md
-  src/test/*.h
-  src/test/*.md)
+  include/*.h
+  include/*.cpp
+  include/*.md
+  src/*.h
+  src/*.cpp
+  src/*.md
+  Builds/*.md
+  *.md)
 list(APPEND doxygen_input
-  README.md
-  RELEASENOTES.md
-  src/README.md)
+  external/README.md
+  )
 set(dependencies "${doxygen_input}" "${doxyfile}")
 
 function(verbose_find_path variable name)
diff --git a/docs/Doxyfile b/docs/Doxyfile
index 48a0b5d1e1a..750ae0fb649 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -103,18 +103,17 @@ WARN_LOGFILE           =
 # Configuration options related to the input files
 #---------------------------------------------------------------------------
 INPUT                  = \
-    docs \
-    src/ripple \
-    src/test \
-    src/README.md \
-    README.md \
-    RELEASENOTES.md \
+    . \
 
 
 INPUT_ENCODING         = UTF-8
 FILE_PATTERNS          = *.h *.cpp *.md
 RECURSIVE              = YES
-EXCLUDE                =
+EXCLUDE                = \
+    .github \
+    external/ed25519-donna \
+    external/secp256k1 \
+
 EXCLUDE_SYMLINKS       = NO
 EXCLUDE_PATTERNS       =
 EXCLUDE_SYMBOLS        =
@@ -130,7 +129,7 @@ INPUT_FILTER           =
 FILTER_PATTERNS        =
 FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
-USE_MDFILE_AS_MAINPAGE = src/README.md
+USE_MDFILE_AS_MAINPAGE = ./README.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing
diff --git a/external/README.md b/external/README.md
index f45f80965a5..25ae577ba58 100644
--- a/external/README.md
+++ b/external/README.md
@@ -1,3 +1,5 @@
+# External Conan recipes
+
 The subdirectories in this directory contain either copies or Conan recipes
 of external libraries used by rippled.
 The Conan recipes include patches we have not yet pushed upstream.
diff --git a/include/xrpl/proto/org/xrpl/rpc/v1/README.md b/include/xrpl/proto/org/xrpl/rpc/v1/README.md
index c5000104257..9268439847d 100644
--- a/include/xrpl/proto/org/xrpl/rpc/v1/README.md
+++ b/include/xrpl/proto/org/xrpl/rpc/v1/README.md
@@ -1,3 +1,5 @@
+# Protocol buffer definitions for gRPC
+
 This folder contains the protocol buffer definitions used by the rippled gRPC API.
 The gRPC API attempts to mimic the JSON/Websocket API as much as possible.
 As of April 2020, the gRPC API supports a subset of the full rippled API:
diff --git a/src/xrpld/app/reporting/README.md b/src/xrpld/app/reporting/README.md
index 745cbb633a9..f55b2d8d60d 100644
--- a/src/xrpld/app/reporting/README.md
+++ b/src/xrpld/app/reporting/README.md
@@ -1,3 +1,5 @@
+# Reporting mode
+
 Reporting mode is a special operating mode of rippled, designed to handle RPCs
 for validated data. A server running in reporting mode does not connect to the
 p2p network, but rather extracts validated data from a node that is connected