diff --git a/scvi/external/stereoscope/_model.py b/scvi/external/stereoscope/_model.py index a5919f46b4..426f262dfe 100644 --- a/scvi/external/stereoscope/_model.py +++ b/scvi/external/stereoscope/_model.py @@ -26,8 +26,8 @@ class RNAStereoscope(UnsupervisedTrainingMixin, BaseModelClass): Examples -------- >>> sc_adata = anndata.read_h5ad(path_to_sc_anndata) - >>> scvi.data.setup_anndata(sc_adata, label_key="labels") - >>> stereo = scvi.external.RNAStereoscope(sc_adata) + >>> scvi.data.setup_anndata(sc_adata, labels_key="labels") + >>> stereo = scvi.external.stereoscope.RNAStereoscope(sc_adata) >>> stereo.train() """ @@ -130,14 +130,14 @@ class SpatialStereoscope(UnsupervisedTrainingMixin, BaseModelClass): Examples -------- >>> sc_adata = anndata.read_h5ad(path_to_sc_anndata) - >>> scvi.data.setup_anndata(sc_adata, label_key="labels") - >>> sc_model = scvi.external.RNAStereoscope(sc_adata) + >>> scvi.data.setup_anndata(sc_adata, labels_key="labels") + >>> sc_model = scvi.external.stereoscope.RNAStereoscope(sc_adata) >>> sc_model.train() >>> st_adata = anndata.read_h5ad(path_to_st_anndata) >>> scvi.data.setup_anndata(st_adata) - >>> stereo = scvi.external.SpatialStereoscope.from_rna_model(st_adata, sc_model) + >>> stereo = scvi.external.stereoscope.SpatialStereoscope.from_rna_model(st_adata, sc_model) >>> stereo.train() - >>> st_adata.obs["deconv"] = stereo.get_proportions() + >>> st_adata.obsm["deconv"] = stereo.get_proportions() Notes -----