run

#! /bin/bash
#
#
FLYWHEEL_BASE=/flywheel/v0

# Set paths
OUTPUT_DIR=$FLYWHEEL_BASE/output
INPUT_DIR=$FLYWHEEL_BASE/input/dicom

# Look for input and run algorithm
if [[ -z $@ ]]
    then
      input_file=`find $INPUT_DIR -type f -name "*.zip*" | head -1`
      if [[ -n $input_file ]]
        then
            bni=`basename "$input_file"`
            output_file_base=$OUTPUT_DIR/${bni%.zip}
            /flywheel/v0/dcm-convert.py "$input_file" "$output_file_base"
      else
            echo "No inputs were provided and $INPUT_DIR has no valid input files!"
            exit 1
      fi
else
  # Do the work
  $FLYWHEEL_BASE/dcm_convert.py $@
fi

# Get a list of the files in the output directory
outputs=`find $OUTPUT_DIR -type f -name "*"`

# If outputs exist, then go on...
if [[ -z $outputs ]]
    then
        echo "No results found in output directory... Exiting"
        exit 1
    else
        chmod -R 777 $OUTPUT_DIR
        echo -e "Wrote: `ls $OUTPUT_DIR`"
fi

exit 0