Updates the Docs #4020
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Updates the Docs #4020
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@philippotto Can you please help here. I would like to include a short example of a mapping file / schema. See my |
philippotto
approved these changes
Apr 16, 2019
docs/volume_annotation.md
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| ### Mappings / On-Demand Agglomeration | ||
| With webKnossos it is possible to apply a precomputed agglomeration file to combine over-segmentated volume annotations on demand. This eleviates the demand to materialize agglomeration results prematurely and allows researchs to apply different agglomerations to the data for experimentation. We typically produce several agglomeration results based on diffent thresholds and methods and use webKnossos to quickly review theses results on subsets of a dataset in an interactive session. | ||
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| Mapping files are automatically identified by webKnossos when being placed in the same directory as the data. All available mappings can be activated from a dropwdown in the "Segmentation" information pane, typically on the right-hand side of the screen. Due to their file size, mappings are fetched on demand before being applied. Users can easily switch between several mappings and webKnossos will update accordingly. |
docs/volume_annotation.md
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| Mapping files are in JSON and need to follow this schema: | ||
| ``` | ||
| { | ||
| TODO |
There was a problem hiding this comment.
{
"name": "astrocytes",
"classes": [
[
69381,
69445,
138248
], [
138307,
343831
], [
348348,
132432,
387433,
338330
]
]
}
docs/volume_annotation.md
Outdated
| ### Mappings / On-Demand Agglomeration | ||
| With webKnossos it is possible to apply a precomputed agglomeration file to combine over-segmentated volume annotations on demand. This eleviates the demand to materialize agglomeration results prematurely and allows researchs to apply different agglomerations to the data for experimentation. We typically produce several agglomeration results based on diffent thresholds and methods and use webKnossos to quickly review theses results on subsets of a dataset in an interactive session. | ||
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| Mapping files are automatically identified by webKnossos when being placed in the same directory as the data. All available mappings can be activated from a dropwdown in the "Segmentation" information pane, typically on the right-hand side of the screen. Due to their file size, mappings are fetched on demand before being applied. Users can easily switch between several mappings and webKnossos will update accordingly. |
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when being placed in a "mappings" folder within the segmentation folder
hotzenklotz
added a commit
that referenced
this pull request
Apr 25, 2019
* master: (43 commits) update screenshots (#4038) docker: don't set sbt/ivy cache (#4034) Slow down brush size change for small sizes (#4012) voulme tool bar now depends only on the active tool (#4029) Allow user to adapt GPU memory consumption to allow for better quality (#4015) Updates the Docs (#4020) hiding pricing and features in iframe (#4019) Fix sitemap for publication detail view (#4024) Add sitemap.xml (#4006) Allow empty trees (#4010) Prefer annotation zoom over dataset zoom (#3992) Add details view for publications (#3994) remove enzyme test (#3997) Tensorflow segmentation (#3461) ensure that max zoom step is not exceeded when changing viewport area (#3996) allow isosurfaces for hybrid tracings when setting window.allowIsosurfaces (#3998) re-fetch buckets if fetching them failed (#3999) Only re-compute bounding sphere of skeletons if something changed (#3995) Fix dropdown login padding (#3988) Persist tree visibility (#3942) ...
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I updated the docs very slightly:
TODO:
URL of deployed dev instance (used for testing):
Steps to test: