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- The AI-based Quick Select can now be run on multiple sections at once. This can be configured in the tool settings. Also, the underlying model now uses Segment Anything 2. [#7965](https://github.com/scalableminds/webknossos/pull/7965)
15
+
- Metadata entries can now be added to datasets and folders. The metadata can be viewed and edited in the dashboard in the right details tab. [#7886](https://github.com/scalableminds/webknossos/pull/7886)
16
+
- The AI-based Quick Select can now be triggered with a single click. Drawing a rectangle is still supported. [#7993](https://github.com/scalableminds/webknossos/pull/7993)
17
+
- Added the option to resume an unfinished upload even after browser restarts. [#7981](https://github.com/scalableminds/webknossos/pull/7981)
18
+
- Added a feature to register all segments for a given bounding box at once via the context menu of the bounding box. [#7979](https://github.com/scalableminds/webknossos/pull/7979)
19
+
20
+
### Added
21
+
- WEBKNOSSOS now automatically searches in subfolder / sub-collection identifiers for valid datasets in case a provided link to a remote dataset does not directly point to a dataset. [#7912](https://github.com/scalableminds/webknossos/pull/7912)
22
+
- Added the option to move a bounding box via dragging while pressing ctrl / meta. [#7892](https://github.com/scalableminds/webknossos/pull/7892)
23
+
- Added route `/import?url=<url_to_datasource>` to automatically import and view remote datasets. [#7844](https://github.com/scalableminds/webknossos/pull/7844)
24
+
- Added that newly created, modified and clicked on bounding boxes are now highlighted and scrolled into view, while the bounding box tool is active. [#7935](https://github.com/scalableminds/webknossos/pull/7935)
25
+
- The configured unit in the dataset upload view is now passed to the convert_to_wkw worker job. [#7970](https://github.com/scalableminds/webknossos/pull/7970)
26
+
- Added option to expand or collapse all subgroups of a segment group in the segments tab. [#7911](https://github.com/scalableminds/webknossos/pull/7911)
27
+
- The context menu that is opened upon right-clicking a segment in the dataview port now contains the segment's name. [#7920](https://github.com/scalableminds/webknossos/pull/7920)
28
+
- Upgraded backend dependencies for improved performance and stability. [#7922](https://github.com/scalableminds/webknossos/pull/7922)
29
+
- Added Support for streaming datasets via Zarr version 3. [#7941](https://github.com/scalableminds/webknossos/pull/7941)
30
+
- It is now saved whether segment groups are collapsed or expanded, so this information doesn't get lost e.g. upon page reload. [#7928](https://github.com/scalableminds/webknossos/pull/7928/)
31
+
- It is now saved whether skeleton groups are collapsed or expanded. This information is also persisted to NML output. [#7939](https://github.com/scalableminds/webknossos/pull/7939)
32
+
- The context menu entry "Focus in Segment List" expands all necessary segment groups in the segments tab to show the highlighted segment. [#7950](https://github.com/scalableminds/webknossos/pull/7950)
33
+
- In the proofreading mode, you can enable/disable that only the active segment and the hovered segment are rendered. [#7654](https://github.com/scalableminds/webknossos/pull/7654)
34
+
- Upgraded s3 client for improved performance when loading remote datasets. [#7936](https://github.com/scalableminds/webknossos/pull/7936)
35
+
- The performance of the bounding box tab was improved. [#7974](https://github.com/scalableminds/webknossos/pull/7974)
36
+
- Added support for reading zstd-compressed zarr2 datasets [#7964](https://github.com/scalableminds/webknossos/pull/7964)
37
+
- The alignment job is in a separate tab of the "AI Tools" now. The "Align Sections" AI job now supports including manually created matches between adjacent section given as skeletons. [#7967](https://github.com/scalableminds/webknossos/pull/7967)
38
+
- Added `api.tracing.createNode(position, options)` to the front-end API. [#7998](https://github.com/scalableminds/webknossos/pull/7998)
39
+
- Added links in the workflow report for skipped tasks to the corresponding workflow view. [#8006](https://github.com/scalableminds/webknossos/pull/8006)
40
+
- Upgraded backend dependencies for improved performance and stability, including a memory leak fix for FossilDB. [#8014](https://github.com/scalableminds/webknossos/pull/8014)
41
+
42
+
### Changed
43
+
- Replaced skeleton tab component with antd's `<Tree />`component. Added support for selecting tree ranges with SHIFT. [#7819](https://github.com/scalableminds/webknossos/pull/7819)
44
+
- The warning about a mismatch between the scale of a pre-computed mesh and the dataset scale's factor now also considers all supported mags of the active segmentation layer. This reduces the false posive rate regarding this warning. [#7921](https://github.com/scalableminds/webknossos/pull/7921/)
45
+
- It is no longer allowed to edit annotations of other organizations, even if they are set to public and to others-may-edit. [#7923](https://github.com/scalableminds/webknossos/pull/7923)
46
+
- When proofreading segmentations, the user can now interact with super-voxels directly in the data viewports. Additionally, proofreading is significantly faster because the segmentation data doesn't have to be re-downloaded after each merge/split operation. [#7654](https://github.com/scalableminds/webknossos/pull/7654)
47
+
- Changed internal data model changing an organization's name to id and its displayName to name. The previously existing id was removed. [#7386](https://github.com/scalableminds/webknossos/pull/7386)
48
+
- Because of the way our models are trained, AI analysis and training is disabled for 2D and ND datasets, as well as for color layers with data type uInt24. [#7957](https://github.com/scalableminds/webknossos/pull/7957)
49
+
- The overall performance was improved (especially for the segments tab). [#7958](https://github.com/scalableminds/webknossos/pull/7958)
50
+
- The performance for the skeleton tab was improved. [#7989](https://github.com/scalableminds/webknossos/pull/7989)
51
+
- Upgraded ant icons to version 5.4. [#8007](https://github.com/scalableminds/webknossos/pull/8007)
52
+
- Increased maximum depth for ai-based quick select from 5 to 16. [#8021](https://github.com/scalableminds/webknossos/pull/8021)
53
+
- Zarr-streaming now uses the new unit-aware voxel size. This means that [wk-libs client v0.14.25 or newer](https://github.com/scalableminds/webknossos-libs/releases) is needed for dataset zarr streaming. [#8012](https://github.com/scalableminds/webknossos/pull/8012)
54
+
- Updated React to version 17. [#7765](https://github.com/scalableminds/webknossos/pull/7765)
55
+
56
+
### Fixed
57
+
- Fixed a bug that allowed the default newly created bounding box to appear outside the dataset. In case the whole bounding box would be outside it is created regardless. [#7892](https://github.com/scalableminds/webknossos/pull/7892)
58
+
- Fixed a rare bug that could cause hanging dataset uploads. [#7932](https://github.com/scalableminds/webknossos/pull/7932)
59
+
- Fixed that comments of the active tree were not scrolled into view in some cases when switching to the comments tab. [8022](https://github.com/scalableminds/webknossos/pull/8022)
60
+
- Fixed that trashcan icons to remove layers during remote dataset upload were floating above the navbar. [#7954](https://github.com/scalableminds/webknossos/pull/7954)
61
+
- Fixed that the flood-filling action was available in the context menu although an editable mapping is active. Additionally volume related actions were removed from the context menu if only a skeleton layer is visible. [#7975](https://github.com/scalableminds/webknossos/pull/7975)
62
+
- Fixed that activating the skeleton tab would always change the active position to the active node. [#7958](https://github.com/scalableminds/webknossos/pull/7958)
63
+
- Made the newly added `filePaths` argument of the reserve upload route (see [#7981](https://github.com/scalableminds/webknossos/pull/7981)) optional to be backwards compatible with wklibs. [#8045](https://github.com/scalableminds/webknossos/pull/8045)
64
+
- Fixed that skeleton groups couldn't be collapsed or expanded in locked annotations. [#7988](https://github.com/scalableminds/webknossos/pull/7988)
65
+
- Fixed that the dashboard didn't notify the user about new datasets in the table. [#8025](https://github.com/scalableminds/webknossos/pull/8025)
66
+
- Fixed that registering segments for a bounding box did only work if the segmentation had mag 1. [#8009](https://github.com/scalableminds/webknossos/pull/8009)
67
+
- Fixed uploading datasets in neuroglancer precomputed and n5 data format. [#8008](https://github.com/scalableminds/webknossos/pull/8008)
68
+
- Various fixes for composing datasets with landmarks. Note that the interpretation of correspondence points was inverted for thin plate splines. [#7992](https://github.com/scalableminds/webknossos/pull/7992)
- WEBKNOSSOS now automatically searches in subfolder / sub-collection identifiers for valid datasets in case a provided link to a remote dataset does not directly point to a dataset. [#7912](https://github.com/scalableminds/webknossos/pull/7912)
15
-
- Added the option to move a bounding box via dragging while pressing ctrl / meta. [#7892](https://github.com/scalableminds/webknossos/pull/7892)
16
-
- Added the option to add metadata entries to datasets and folders. The metadata can be viewed and edited in the dashboard in the right details tab.[#7886](https://github.com/scalableminds/webknossos/pull/7886)
17
-
- Added route `/import?url=<url_to_datasource>` to automatically import and view remote datasets. [#7844](https://github.com/scalableminds/webknossos/pull/7844)
18
-
- Added that newly created, modified and clicked on bounding boxes are now highlighted and scrolled into view, while the bounding box tool is active. [#7935](https://github.com/scalableminds/webknossos/pull/7935)
19
-
- The configured unit in the dataset upload view is now passed to the convert_to_wkw worker job. [#7970](https://github.com/scalableminds/webknossos/pull/7970)
20
-
- Added option to expand or collapse all subgroups of a segment group in the segments tab. [#7911](https://github.com/scalableminds/webknossos/pull/7911)
21
-
- The context menu that is opened upon right-clicking a segment in the dataview port now contains the segment's name. [#7920](https://github.com/scalableminds/webknossos/pull/7920)
22
-
- Upgraded backend dependencies for improved performance and stability. [#7922](https://github.com/scalableminds/webknossos/pull/7922)
23
-
- Added Support for streaming datasets via Zarr version 3. [#7941](https://github.com/scalableminds/webknossos/pull/7941)
24
-
- It is now saved whether segment groups are collapsed or expanded, so this information doesn't get lost e.g. upon page reload. [#7928](https://github.com/scalableminds/webknossos/pull/7928/)
25
-
- It is now saved whether skeleton groups are collapsed or expanded. This information is also persisted to NML output. [#7939](https://github.com/scalableminds/webknossos/pull/7939)
26
-
- The context menu entry "Focus in Segment List" expands all necessary segment groups in the segments tab to show the highlighted segment. [#7950](https://github.com/scalableminds/webknossos/pull/7950)
27
-
- In the proofreading mode, you can enable/disable that only the active segment and the hovered segment are rendered. [#7654](https://github.com/scalableminds/webknossos/pull/7654)
28
-
- Upgraded s3 client for improved performance when loading remote datasets. [#7936](https://github.com/scalableminds/webknossos/pull/7936)
29
-
- The AI-based Quick Select can now be run on multiple sections at once. This can be configured in the tool settings. Also, the underlying model now uses Segment Anything 2. [#7965](https://github.com/scalableminds/webknossos/pull/7965)
30
-
- The AI-based Quick Select can now be triggered with a single click. Drawing a rectangle is still supported. [#7993](https://github.com/scalableminds/webknossos/pull/7993)
31
-
- To improve performance, only the visible bounding boxes are rendered in the bounding box tab (so-called virtualization). [#7974](https://github.com/scalableminds/webknossos/pull/7974)
32
-
- Added support for reading zstd-compressed zarr2 datasets [#7964](https://github.com/scalableminds/webknossos/pull/7964)
33
-
- Added the option to resume an unfinished upload event after browser restarts. [#7981](https://github.com/scalableminds/webknossos/pull/7981)
34
-
- The alignment job is in a separate tab of the "AI Tools" now. The "Align Sections" AI job now supports including manually created matches between adjacent section given as skeletons. [#7967](https://github.com/scalableminds/webknossos/pull/7967)
35
-
- Added `api.tracing.createNode(position, options)`` to the front-end API. [#7998](https://github.com/scalableminds/webknossos/pull/7998)
36
-
- Added a feature to register all segments for a given bounding box at once via the context menu of the bounding box. [#7979](https://github.com/scalableminds/webknossos/pull/7979)
37
-
- Added links in the workflow report for skipped tasks to the corresponding workflow view. [#8006](https://github.com/scalableminds/webknossos/pull/8006)
38
-
- Upgraded backend dependencies for improved performance and stability, including a memory leak fix for FossilDB. [#8014](https://github.com/scalableminds/webknossos/pull/8014)
39
14
40
15
### Changed
41
-
- Replaced skeleton tab component with antd's `<Tree />`component. Added support for selecting tree ranges with SHIFT. [#7819](https://github.com/scalableminds/webknossos/pull/7819)
42
-
- The warning about a mismatch between the scale of a pre-computed mesh and the dataset scale's factor now also considers all supported mags of the active segmentation layer. This reduces the false posive rate regarding this warning. [#7921](https://github.com/scalableminds/webknossos/pull/7921/)
43
-
- It is no longer allowed to edit annotations of other organizations, even if they are set to public and to others-may-edit. [#7923](https://github.com/scalableminds/webknossos/pull/7923)
44
-
- When proofreading segmentations, the user can now interact with super-voxels directly in the data viewports. Additionally, proofreading is significantly faster because the segmentation data doesn't have to be re-downloaded after each merge/split operation. [#7654](https://github.com/scalableminds/webknossos/pull/7654)
45
-
- Changed internal data model changing an organization's name to id and its displayName to name. The previously existing id was removed. [#7386](https://github.com/scalableminds/webknossos/pull/7386)
46
-
- Because of the way our models are trained, AI analysis and training is disabled for 2D and ND datasets, as well as for color layers with data type uInt24. [#7957](https://github.com/scalableminds/webknossos/pull/7957)
47
-
- The overall performance was improved (especially for the segments tab). [#7958](https://github.com/scalableminds/webknossos/pull/7958)
48
-
- The performance for the skeleton tab was improved. [#7989](https://github.com/scalableminds/webknossos/pull/7989)
49
-
- Upgraded ant icons to version 5.4. [#8007](https://github.com/scalableminds/webknossos/pull/8007)
50
-
- Increased maximum depth for ai-based quick select from 5 to 16. [#8021](https://github.com/scalableminds/webknossos/pull/8021)
51
-
- Zarr-streaming now uses the new unit-aware voxel size. This means that [wk-libs client v0.14.25 or newer](https://github.com/scalableminds/webknossos-libs/releases) is needed for dataset zarr streaming. [#8012](https://github.com/scalableminds/webknossos/pull/8012)
52
-
- Updated React to version 17. [#7765](https://github.com/scalableminds/webknossos/pull/7765)
53
16
54
17
### Fixed
55
-
- Fixed a bug that allowed the default newly created bounding box to appear outside the dataset. In case the whole bounding box would be outside it is created regardless. [#7892](https://github.com/scalableminds/webknossos/pull/7892)
56
-
- Fixed a rare bug that could cause hanging dataset uploads. [#7932](https://github.com/scalableminds/webknossos/pull/7932)
57
-
- Fixed that comments of the active tree were not scrolled into view in some cases when switching to the comments tab. [8022](https://github.com/scalableminds/webknossos/pull/8022)
58
-
- Fixed that trashcan icons to remove layers during remote dataset upload were floating above the navbar. [#7954](https://github.com/scalableminds/webknossos/pull/7954)
59
-
- Fixed that the flood-filling action was available in the context menu although an editable mapping is active. Additionally volume related actions were removed from the context menu if only a skeleton layer is visible. [#7975](https://github.com/scalableminds/webknossos/pull/7975)
60
-
- Fixed that activating the skeleton tab would always change the active position to the active node. [#7958](https://github.com/scalableminds/webknossos/pull/7958)
61
-
- Made the newly added `filePaths` argument of the reserve upload route (see [#7981](https://github.com/scalableminds/webknossos/pull/7981)) optional to be backwards compatible with wklibs. [#8045](https://github.com/scalableminds/webknossos/pull/8045)
62
-
- Fixed that skeleton groups couldn't be collapsed or expanded in locked annotations. [#7988](https://github.com/scalableminds/webknossos/pull/7988)
63
-
- Fixed that the dashboard didn't notify the user about new datasets in the table. [#8025](https://github.com/scalableminds/webknossos/pull/8025)
64
-
- Fixed that registering segments for a bounding box did only work if the segmentation had mag 1. [#8009](https://github.com/scalableminds/webknossos/pull/8009)
65
-
- Fixed uploading datasets in neuroglancer precomputed and n5 data format. [#8008](https://github.com/scalableminds/webknossos/pull/8008)
66
-
- Various fixes for composing datasets with landmarks. Note that the interpretation of correspondence points was inverted for thin plate splines. [#7992](https://github.com/scalableminds/webknossos/pull/7992)
- If Segment Anything was already configured, it needs to be pointed to an endpoint that works with SAM 2. [#7965](https://github.com/scalableminds/webknossos/pull/7965)
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