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I'm trying to run the pathway analysis using DEenrichrPlot function and getting same pathways for positive and negative markers. DEenrichRPlot(
object = cell_subset,
ident.1 = ident1,
ident.2 = ident2,
balanced = TRUE,
logfc_threshold = 0.25,
pval_cutoff = 0.05,
max_genes = 2000,
num_pathways = 30,
enrich_database = "MSigDB_Hallmark_2020"
) Can you please help?
Thanks!
The text was updated successfully, but these errors were encountered:
Hi Team,
I'm trying to run the pathway analysis using DEenrichrPlot function and getting same pathways for positive and negative markers. DEenrichRPlot(
object = cell_subset,
ident.1 = ident1,
ident.2 = ident2,
balanced = TRUE,
logfc_threshold = 0.25,
pval_cutoff = 0.05,
max_genes = 2000,
num_pathways = 30,
enrich_database = "MSigDB_Hallmark_2020"
) Can you please help?
Thanks!
The text was updated successfully, but these errors were encountered: