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How to pass continuous_covariate_keys to scVI integration method within IntegrateLayers? #9071

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greengeckoruns opened this issue Jul 1, 2024 · 1 comment

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@greengeckoruns
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greengeckoruns commented Jul 1, 2024

Hello,

I am using the IntegrateLayers() function with the method=scVIIntegration argument. I would like to pass continuous_covariate_keys to the function so as to regress them out during integration (%Mito, nCounts_RNA, etc.). Is there a way to do that within the IntegrateLayers function call, or is there a way to modify the scVIIntegration function itself to achieve that goal?

Thank you.

@greengeckoruns
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Found it here, my apologies for missing it in the first place.

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