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It is really strange, because in the before, I can install seurat easily in R3.5.
But after update the R to 3.6.1, I confront the problem in installing seurat in Centos as following:
install.packages('Seurat')
Installing package into ‘/gpfs/ycga/home/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/Seurat_3.1.1.tar.gz'
Content type 'application/x-gzip' length 790426 bytes (771 KB)
==================================================
downloaded 771 KB
ERROR: failed to lock directory ‘/gpfs/ycga/home/R/x86_64-pc-linux-gnu-library/3.6’ for modifying
Try removing ‘/gpfs/ycga/home/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-Seurat’
Warning in install.packages :
installation of package ‘Seurat’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpFC9sMA/downloaded_packages’
It is really strange, because in the before, I can install seurat easily in R3.5.
But after update the R to 3.6.1, I confront the problem in installing seurat in Centos as following:
ERROR: failed to lock directory ‘/gpfs/ycga/home/R/x86_64-pc-linux-gnu-library/3.6’ for modifying
Try removing ‘/gpfs/ycga/home/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-Seurat’
Warning in install.packages :
installation of package ‘Seurat’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpFC9sMA/downloaded_packages’
So how can I handle this problem?
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