From bda91eb070269fd198523fc4312983c409d424c5 Mon Sep 17 00:00:00 2001 From: David Collins Date: Fri, 20 Dec 2024 14:34:33 -0500 Subject: [PATCH] Update CRAN comments --- cran-comments.md | 35 +++++++++++++++++++---------------- 1 file changed, 19 insertions(+), 16 deletions(-) diff --git a/cran-comments.md b/cran-comments.md index 09e951b1f..fed512508 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,31 +1,34 @@ -# Seurat v5.1.0 +# Seurat v5.2.0 ## Test environments -* local ubuntu 20.04 install, R 4.3.2 -* local macOS 14.1, R 4.4.0 +* local ubuntu 20.04 install, R 4.4.2 * win-builder (oldrelease, release, devel) +* mac-builder (devel) + +We were unable to test on r-release on mac-builder because the portal seemed to point to the wrong version. ## R CMD check results There were no ERRORs or WARNINGs -There were two NOTEs - -> Suggests or Enhances not in mainstream repositories: -> BPCells, presto -> Availability using Additional_repositories specification: -> BPCells yes https://bnprks.r-universe.dev -> presto yes https://satijalab.r-universe.dev +There was one NOTE -> * checking package dependencies ... NOTE -> Package suggested but not available for checking: 'BPCells', 'presto' +❯ checking CRAN incoming feasibility ... [12s/61s] NOTE + Maintainer: ‘Rahul Satija ’ + + Suggests or Enhances not in mainstream repositories: + BPCells, enrichR, presto + Availability using Additional_repositories specification: + BPCells yes https://bnprks.r-universe.dev + enrichR yes https://cran.r-universe.dev + presto yes https://satijalab.r-universe.dev -BPCells and presto are hosted on R-universe and used conditionally in Seurat. +BPCells, enrichR, and presto are hosted on R-universe and used conditionally in Seurat. ## Downstream dependencies -There are three packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality +There are 3 packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality. -There are 30 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SPECK, STREAK, and tidyseurat; this update does not impact their functionality +There are 34 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PoweREST, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, SCIntRuler, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SpaCCI, SPECK, STREAK, and tidyseurat; this update does not impact their functionality. -There are 22 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, grandR, harmony, RESET, rliger, SCORPIUS, SCpubr, Signac, treefit, and VAM; this update does not impact their functionality +There are 27 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, easybio, grandR, harmony, laminr, mxfda, RESET, rliger, SCORPIUS, SCpubr, scregclust, Signac, SuperCell, treefit, and VAM; this update does not impact their functionality.