diff --git a/DESCRIPTION b/DESCRIPTION
index 06d218a..abcb2d9 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: SeuratWrappers
 Title: Community-Provided Methods and Extensions for the Seurat Object
-Version: 0.3.2
-Date: 2023-11-4
+Version: 0.3.3
+Date: 2024-01-19
 Authors@R: c(
   person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
   person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
@@ -9,7 +9,8 @@ Authors@R: c(
   person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897')), 
   person(given = "Yuhan", family = "Hao", email = "yhao@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-1810-0822")),
   person(given = "Austin", family = "Hartman", email = "ahartman@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-7278-1852")),
-  person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-8628-5056'))
+  person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-8628-5056')),
+  person(given = "Saket", family = "Choudhary", email = "schoudhary@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-5202-7633"))
   )
 Description: SeuratWrappers is a collection of community-provided methods and
     extensions for Seurat, curated by the Satija Lab at NYGC. These methods
@@ -64,7 +65,7 @@ Collate:
     'velocity.R'
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.0
 Suggests:
     cipr,
     conos,
diff --git a/R/miqc.R b/R/miqc.R
index d897bef..099deb5 100644
--- a/R/miqc.R
+++ b/R/miqc.R
@@ -165,7 +165,6 @@ RunMiQC <- function(
 #'
 #' @param object Seurat object
 #' @details _Function to plot the miQC mixture model stored in a Seurat object. `RunMiQC` must be run prior to plotting._
-#' @return
 #' @references Hippen et al. (2021) miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. bioRxiv doi: 10.1101/2021.03.03.433798
 #'
 #' @importFrom rlang %||%
diff --git a/R/scVI.R b/R/scVI.R
index bcc426c..b23633b 100644
--- a/R/scVI.R
+++ b/R/scVI.R
@@ -4,7 +4,7 @@ NULL
 
 #' Run scVI in seurat5
 #' @param object A merged Seurat object
-#' @param groups A one-column data frame with grouping information
+#' @param groups Name of the metadata column to be used as the 'batch_key'
 #' @param features features to use
 #' @param layers Layers to use
 #' @param conda_env conda environment to run scVI
@@ -61,11 +61,11 @@ scVIIntegration <- function(
   scipy <-  reticulate::import('scipy', convert = FALSE)
   object <- JoinLayers(object = object, layers = 'counts')
   adata <- sc$AnnData(
-    X   = scipy$sparse$csr_matrix(Matrix::t(LayerData(object, layers = 'counts')[features ,]) ), #scVI requires raw counts
-    obs = groups,
-    var = object[][features,]
+    X   = scipy$sparse$csr_matrix(Matrix::t(LayerData(object, layer = 'counts')[features ,]) ), #scVI requires raw counts
+    obs = object[[]],
+    var = object[[DefaultAssay(object)]][[]][features,]
   )
-  scvi$model$SCVI$setup_anndata(adata,  batch_key = 'group')
+  scvi$model$SCVI$setup_anndata(adata,  batch_key = groups)
   model = scvi$model$SCVI(adata = adata,
                           n_latent = as.integer(x = ndims),
                           n_layers = as.integer(x = nlayers),
diff --git a/man/SeuratWrappers-package.Rd b/man/SeuratWrappers-package.Rd
index fa0c1d4..640c70c 100644
--- a/man/SeuratWrappers-package.Rd
+++ b/man/SeuratWrappers-package.Rd
@@ -18,4 +18,12 @@ Authors:
   \item Tim Stuart \email{tstuart@nygenome.org} (\href{https://orcid.org/0000-0002-3044-0897}{ORCID})
 }
 
+Other contributors:
+\itemize{
+  \item Yuhan Hao \email{yhao@nygenome.org} (\href{https://orcid.org/0000-0002-1810-0822}{ORCID}) [contributor]
+  \item Austin Hartman \email{ahartman@nygenome.org} (\href{https://orcid.org/0000-0001-7278-1852}{ORCID}) [contributor]
+  \item Gesmira Molla \email{gmolla@nygenome.org} (\href{https://orcid.org/0000-0002-8628-5056}{ORCID}) [contributor]
+  \item Saket Choudhary \email{schoudhary@nygenome.org} (\href{https://orcid.org/0000-0001-5202-7633}{ORCID}) [contributor]
+}
+
 }
diff --git a/man/VeloPlot.Rd b/man/VeloPlot.Rd
index 25a362c..b7b8487 100644
--- a/man/VeloPlot.Rd
+++ b/man/VeloPlot.Rd
@@ -7,10 +7,6 @@
 VeloPlot(object, reduction = NULL, ...)
 }
 \arguments{
-\item{object}{Seurat object}
-
-\item{reduction}{Which dimensionality reduction to use. If not specified, first searches for umap, then tsne, then pca}
-
 \item{...}{Extra parameters passed on to \code{\link[velocyto.R]{show.velocity.on.embedding.cor}}}
 }
 \value{
diff --git a/man/as.cell_data_set.Rd b/man/as.cell_data_set.Rd
index dad825e..0a08570 100644
--- a/man/as.cell_data_set.Rd
+++ b/man/as.cell_data_set.Rd
@@ -23,8 +23,6 @@ as.cell_data_set(x, ...)
 
 \item{...}{Arguments passed to other methods}
 
-\item{assay}{Assays to convert}
-
 \item{reductions}{A vector of dimensional reductions add to the
 \code{cell_data_set} object; defaults to all dimensional reductions
 calculated from \code{assay} and all \link[Seurat:IsGlobal]{global}
diff --git a/man/scVIIntegration.Rd b/man/scVIIntegration.Rd
index 2481c7e..4da041a 100644
--- a/man/scVIIntegration.Rd
+++ b/man/scVIIntegration.Rd
@@ -21,7 +21,7 @@ scVIIntegration(
 \arguments{
 \item{object}{A merged Seurat object}
 
-\item{groups}{A one-column data frame with grouping information}
+\item{groups}{Name of the metadata column to be used as the 'batch_key'}
 
 \item{features}{features to use}