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BA.2.86 with S: N487D then acquired S:R346T and S:A348P on a C28115T branch (13 seqs) #1782

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DailyCovidCases opened this issue Jul 25, 2024 · 6 comments

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@DailyCovidCases
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DailyCovidCases commented Jul 25, 2024

From branch 107 of #1089
BA.2.86 > T10819C,C28720T > Orf1b:Y1344H (T17497C) > C21646T, S:N487D (A23021G) ,A23089G, C28115T > S:A348P (G22604C), S:R346T (G22599C)
Query for 487D : T17497C,T10819C,C28115T
Samples: 13 : SA Mozambique
Query for 346T, 348P: A23089G, C28115T ,G22604C,G22599C
Samples : 3 South Africa
usher1
usher2
Screenshot (145)

@FedeGueli FedeGueli changed the title BA.2.86+S:R346T with C28115T branch (16 seqs) BA.2.86 with S: N487D then acquired S:R346T and S:A348P on a C28115T branch (16 seqs) Jul 26, 2024
@FedeGueli FedeGueli changed the title BA.2.86 with S: N487D then acquired S:R346T and S:A348P on a C28115T branch (16 seqs) BA.2.86 with S: N487D then acquired S:R346T and S:A348P on a C28115T branch (13 seqs) Jul 26, 2024
@FedeGueli
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13 (10+3) and headline modified.

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Aug 4, 2024
@xz-keg
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xz-keg commented Aug 8, 2024

Designated BA.2.86.7, MP.1 and MP.1.1 via cov-lineages/pango-designation@4f50432

@FedeGueli
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Designated BA.2.86.7, MP.1 and MP.1.1

BA.2.86.7 has been designated previously not all together with this @aviczhl2 i ve removed the milestone.

@xz-keg
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xz-keg commented Aug 8, 2024

Designated BA.2.86.7, MP.1 and MP.1.1

BA.2.86.7 has been designated previously not all together with this @aviczhl2 i ve removed the milestone.

I cannot find the proposal for BA.2.86.7. Is it designated after this proposal, or just Daily not updating during his copy/paste phase?

@FedeGueli
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Designated BA.2.86.7, MP.1 and MP.1.1

BA.2.86.7 has been designated previously not all together with this @aviczhl2 i ve removed the milestone.

I cannot find the proposal for BA.2.86.7. Is it designated after this proposal, or just Daily not updating during his copy/paste phase?

i think it was designated on its own by Cornelius directly one or two. months ago see cov-lineages/pango-designation@b5893d5

@xz-keg
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xz-keg commented Aug 9, 2024

i think it was designated on its own by Cornelius directly one or two. months ago see cov-lineages/pango-designation@b5893d5

@DailyCovidCases , if you want to make separate issues from multiple lineage issues, please

1: Ask for permission

2: Update descriptions. including

2-1: Adjust the query to ensure monophyletic
2-2: Update counts according to new query
2-3: Adjust description according to updated designations (for example, when proposing this one, you shall describe it as sub-lineage of BA.2.86.7 instead of BA.2.86 in the original issue)
2-4: 2-1~2-3 shall be updated repeatedly to keep track with the new situation (I suggest every week)

That will be helpful, thanks.

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